ci.yml

name: CI

on:
  push:
    branches: [dev, master]
  pull_request:
    branches: [dev, master]

env:
  CXX: g++-9
  CC: gcc-9
  # See coveralls-python - Github Actions support:
  # https://github.com/TheKevJames/coveralls-python/blob/master/docs/usage/configuration.rst#github-actions-support
  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
  COVERALLS_SERVICE_NAME: github


jobs:
  lint:
    runs-on: ubuntu-20.04
    strategy:
      matrix:
        python-version: [3.8]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip wheel setuptools
        pip install ruff black mypy nbstripout nbformat
    - name: Lint
      run: |
        make lint
  docs:
    runs-on: ubuntu-20.04
    needs: lint
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build graphviz
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install -r docs/requirements.txt
          pip freeze
      - name: Build docs and run doctest
        run: |
          make docs
          make doctest
  tutorials-html:
    runs-on: ubuntu-20.04
    needs: lint
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build graphviz pandoc
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install -r docs/requirements.txt
          # requirements for tutorials (from .[dev])
          sudo apt-get install pandoc
          pip install nbformat
          pip install nbsphinx>=0.3.2
          pip install nbstripout
          pip install pypandoc
          pip install ninja
          pip freeze
      - name: Build HTML from tutorials
        run: |
          SPHINXOPTS="-E" make tutorial
  unit:
    runs-on: ubuntu-20.04
    needs: docs
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install --upgrade coveralls
          pip freeze
      - name: Run unit tests
        run: |
          pytest -vs --cov=pyro --cov-config .coveragerc --stage unit --durations 20
      - name: Submit to coveralls
        run: coveralls --service=github || true
        env:
          COVERALLS_PARALLEL: true
          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
  examples:
    runs-on: ubuntu-20.04
    needs: [docs, tutorials-html]
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Setup Graphviz
        uses: ts-graphviz/setup-graphviz@v1
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install --upgrade coveralls
          pip freeze
      - name: Run examples
        run: |
          CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10
          grep -l smoke_test tutorial/source/*.ipynb | xargs grep -L 'smoke_test = False' \
                            | CI=1 xargs pytest -vx --nbval-lax --current-env
      - name: Submit to coveralls
        run: coveralls --service=github || true
        env:
          COVERALLS_PARALLEL: true
          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
  integration_1:
    runs-on: ubuntu-20.04
    needs: docs
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install --upgrade coveralls
          pip freeze
      - name: Run integration test (batch 1)
        run: |
          pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_1 --durations 10
      - name: Submit to coveralls
        run: coveralls --service=github || true
        env:
          COVERALLS_PARALLEL: true
          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
  integration_2:
    runs-on: ubuntu-20.04
    needs: docs
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install --upgrade coveralls
          pip freeze
      - name: Run integration test (batch 2)
        run: |
          pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_2 --durations 10
      - name: Submit to coveralls
        run: coveralls --service=github || true
        env:
          COVERALLS_PARALLEL: true
          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
  funsor:
    runs-on: ubuntu-20.04
    needs: docs
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
          sudo apt-get update
          sudo apt-get install gcc-9 g++-9 ninja-build
          python -m pip install --upgrade pip wheel setuptools
          # Keep track of pyro-api master branch
          pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
          pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
          pip install .[test]
          pip install -e .[funsor]
          pip install --upgrade coveralls
          pip freeze
      - name: Run funsor tests
        run: |
          pytest -vs --cov=pyro --cov-config .coveragerc --stage funsor --durations 10
          CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10 -k funsor
      - name: Submit to coveralls
        run: coveralls --service=github || true
        env:
          COVERALLS_PARALLEL: true
          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
  finish:
    needs: [unit, examples, integration_1, integration_2, funsor]
    runs-on: ubuntu-20.04
    strategy:
      matrix:
        python-version: [3.8]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Coveralls Finished
        run: |
          pip install --upgrade coveralls
          coveralls --service=github --finish || true