pipenv graph only shows dev dependencies instead of all dependencies

[ROldford]

Issue description

pipenv graph is only showing the graph of development dependencies from my Pipfile, and leaving out the regular dependencies.

Expected result

pipenv graph should show the dependency tree for all dependencies in the Pipfile listed below, both in [dependencies] (i.e. openpyxl and ics) and [dev-dependencies]

Actual result

$ pipenv graph 
bumpversion==0.5.3
coverage==4.5.1
cycle-calendar-generator==0.1.0
  - ics [required: Any, installed: 0.4]
    - arrow [required: ==0.4.2, installed: 0.4.2]
      - python-dateutil [required: Any, installed: 2.7.3]
        - six [required: >=1.5, installed: 1.11.0]
    - python-dateutil [required: Any, installed: 2.7.3]
      - six [required: >=1.5, installed: 1.11.0]
    - six [required: >1.5, installed: 1.11.0]
  - openpyxl [required: Any, installed: 2.5.8]
    - et-xmlfile [required: Any, installed: 1.0.1]
    - jdcal [required: Any, installed: 1.4]
flake8==3.5.0
  - mccabe [required: >=0.6.0,<0.7.0, installed: 0.6.1]
  - pycodestyle [required: >=2.0.0,<2.4.0, installed: 2.3.1]
  - pyflakes [required: >=1.5.0,<1.7.0, installed: 1.6.0]
pipenv==2018.10.13
  - certifi [required: Any, installed: 2018.10.15]
  - pip [required: >=9.0.1, installed: 18.0]
  - setuptools [required: >=36.2.1, installed: 40.4.3]
  - virtualenv [required: Any, installed: 16.0.0]
  - virtualenv-clone [required: >=0.2.5, installed: 0.4.0]
pyfakefs==3.4.3
recommonmark==0.4.0
  - commonmark [required: <=0.5.4, installed: 0.5.4]
  - docutils [required: >=0.11, installed: 0.14]
sphinx-rtd-theme==0.4.2
  - sphinx [required: Any, installed: 1.8.1]
    - alabaster [required: >=0.7,<0.8, installed: 0.7.12]
    - babel [required: >=1.3,!=2.0, installed: 2.6.0]
      - pytz [required: >=0a, installed: 2018.5]
    - docutils [required: >=0.11, installed: 0.14]
    - imagesize [required: Any, installed: 1.1.0]
    - Jinja2 [required: >=2.3, installed: 2.10]
      - MarkupSafe [required: >=0.23, installed: 1.0]
    - packaging [required: Any, installed: 18.0]
      - pyparsing [required: >=2.0.2, installed: 2.2.2]
      - six [required: Any, installed: 1.11.0]
    - Pygments [required: >=2.0, installed: 2.2.0]
    - requests [required: >=2.0.0, installed: 2.19.1]
      - certifi [required: >=2017.4.17, installed: 2018.10.15]
      - chardet [required: >=3.0.2,<3.1.0, installed: 3.0.4]
      - idna [required: >=2.5,<2.8, installed: 2.7]
      - urllib3 [required: >=1.21.1,<1.24, installed: 1.23]
    - setuptools [required: Any, installed: 40.4.3]
    - six [required: >=1.5, installed: 1.11.0]
    - snowballstemmer [required: >=1.1, installed: 1.2.1]
    - sphinxcontrib-websupport [required: Any, installed: 1.1.0]
tox==3.5.2
  - filelock [required: >=3.0.0,<4, installed: 3.0.9]
  - pluggy [required: >=0.3.0,<1, installed: 0.8.0]
  - py [required: >=1.4.17,<2, installed: 1.7.0]
  - setuptools [required: >=30.0.0, installed: 40.4.3]
  - six [required: >=1.0.0,<2, installed: 1.11.0]
  - toml [required: >=0.9.4, installed: 0.10.0]
  - virtualenv [required: >=1.11.2, installed: 16.0.0]
twine==1.12.1
  - pkginfo [required: >=1.4.2, installed: 1.4.2]
  - readme-renderer [required: >=21.0, installed: 22.0]
    - bleach [required: >=2.1.0, installed: 3.0.2]
      - six [required: Any, installed: 1.11.0]
      - webencodings [required: Any, installed: 0.5.1]
    - cmarkgfm [required: >=0.2.0, installed: 0.4.2]
      - cffi [required: >=1.0.0, installed: 1.11.5]
        - pycparser [required: Any, installed: 2.19]
    - docutils [required: >=0.13.1, installed: 0.14]
    - future [required: Any, installed: 0.16.0]
    - Pygments [required: Any, installed: 2.2.0]
    - six [required: Any, installed: 1.11.0]
  - requests [required: >=2.5.0,!=2.16,!=2.15, installed: 2.19.1]
    - certifi [required: >=2017.4.17, installed: 2018.10.15]
    - chardet [required: >=3.0.2,<3.1.0, installed: 3.0.4]
    - idna [required: >=2.5,<2.8, installed: 2.7]
    - urllib3 [required: >=1.21.1,<1.24, installed: 1.23]
  - requests-toolbelt [required: >=0.8.0, installed: 0.8.0]
    - requests [required: >=2.0.1,<3.0.0, installed: 2.19.1]
      - certifi [required: >=2017.4.17, installed: 2018.10.15]
      - chardet [required: >=3.0.2,<3.1.0, installed: 3.0.4]
      - idna [required: >=2.5,<2.8, installed: 2.7]
      - urllib3 [required: >=1.21.1,<1.24, installed: 1.23]
  - setuptools [required: >=0.7.0, installed: 40.4.3]
  - tqdm [required: >=4.14, installed: 4.27.0]
watchdog==0.9.0
  - argh [required: >=0.24.1, installed: 0.26.2]
  - pathtools [required: >=0.1.1, installed: 0.1.2]
  - PyYAML [required: >=3.10, installed: 3.13]

Note that ics and openpyxl are missing.

Steps to replicate

Pipfile

[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"

[packages]
openpyxl = "*"
ics = "*"

[dev-packages]
pyfakefs = "*"
bumpversion = "*"
wheel = "*"
"flake8" = "*"
watchdog = "*"
tox = "*"
coverage = "*"
sphinx = "*"
twine = "*"
recommonmark = "*"
sphinx-rtd-theme = "*"

[requires]
python_version = "3.7"

---

$ pipenv --support result

$ pipenv --support

Pipenv version: '2018.10.13'

Pipenv location: '/Users/ryan.oldford/.virtualenvs/cycle_calendar_generator--CzVwIAA/lib/python3.7/site-packages/pipenv'

Python location: '/Users/ryan.oldford/.virtualenvs/cycle_calendar_generator--CzVwIAA/bin/python3.7'

Python installations found:

• 3.7.0: /Users/ryan.oldford/.virtualenvs/cycle_calendar_generator--CzVwIAA/bin/python3.7
• 3.7.0: /usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/bin/python3.7
• 3.7.0: /usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/bin/python3.7m
• 2.7.15: /usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7
• 2.7.10: /usr/bin/python
• 2.7.10: /System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
• 2.7.10: /usr/bin/pythonw
• 2.6.9: /System/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6

PEP 508 Information:

{'implementation_name': 'cpython',
 'implementation_version': '3.7.0',
 'os_name': 'posix',
 'platform_machine': 'x86_64',
 'platform_python_implementation': 'CPython',
 'platform_release': '16.7.0',
 'platform_system': 'Darwin',
 'platform_version': 'Darwin Kernel Version 16.7.0: Wed Oct  4 00:17:00 PDT '
                     '2017; root:xnu-3789.71.6~1/RELEASE_X86_64',
 'python_full_version': '3.7.0',
 'python_version': '3.7',
 'sys_platform': 'darwin'}

System environment variables:

• PATH
• VIRTUALENVWRAPPER_SCRIPT
• VIRTUALENVWRAPPER_PROJECT_FILENAME
• TERM_PROGRAM
• SHELL
• TERM
• TMPDIR
• Apple_PubSub_Socket_Render
• TERM_PROGRAM_VERSION
• TERM_SESSION_ID
• ZSH
• USER
• LS_COLORS
• SSH_AUTH_SOCK
• __CF_USER_TEXT_ENCODING
• PAGER
• WORKON_HOME
• LSCOLORS
• VIRTUALENVWRAPPER_PYTHON
• VIRTUALENVWRAPPER_HOOK_DIR
• PWD
• EDITOR
• LANG
• XPC_FLAGS
• VIRTUALENVWRAPPER_VIRTUALENV
• XPC_SERVICE_NAME
• SHLVL
• HOME
• LESS
• LOGNAME
• LC_CTYPE
• VIRTUALENVWRAPPER_WORKON_CD
• DISPLAY
• SECURITYSESSIONID
• PYTHONDONTWRITEBYTECODE
• PIP_SHIMS_BASE_MODULE
• PIP_PYTHON_PATH
• PIPENV_ACTIVE
• OLDPWD
• VIRTUAL_ENV
• PS1
• _

Pipenv–specific environment variables:

• PIPENV_ACTIVE: 1

Debug–specific environment variables:

• PATH: /Users/ryan.oldford/.virtualenvs/cycle_calendar_generator--CzVwIAA/bin:/Users/ryan.oldford/bin:/usr/local/bin:/usr/local/Cellar/pipenv/2018.10.13/libexec/tools:/Users/ryan.oldford/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Users/ryan.oldford/bin:/Users/ryan.oldford/bin
• SHELL: /usr/local/bin/zsh
• EDITOR: subl
• LANG: en_US.UTF-8
• PWD: /Users/ryan.oldford/Documents/Programming/cycle_calendar_generator
• VIRTUAL_ENV: /Users/ryan.oldford/.virtualenvs/cycle_calendar_generator--CzVwIAA

---

Contents of Pipfile ('/Users/ryan.oldford/Documents/Programming/cycle_calendar_generator/Pipfile'):

[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"

[packages]
openpyxl = "*"
ics = "*"

[dev-packages]
pyfakefs = "*"
bumpversion = "*"
wheel = "*"
"flake8" = "*"
watchdog = "*"
tox = "*"
coverage = "*"
sphinx = "*"
twine = "*"
recommonmark = "*"
sphinx-rtd-theme = "*"

[requires]
python_version = "3.7"

Contents of Pipfile.lock ('/Users/ryan.oldford/Documents/Programming/cycle_calendar_generator/Pipfile.lock'):

{
    "_meta": {
        "hash": {
            "sha256": "25a340714168676fa2084ce18e5f95a7ec07b118f4ba80fc07bf64becc24954a"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.7"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "arrow": {
            "hashes": [
                "sha256:3d46d9ecd67765d1e7551e20aa54d1fe93c5fd77d3445aeec2bf8f048670d0b0"
            ],
            "version": "==0.4.2"
        },
        "et-xmlfile": {
            "hashes": [
                "sha256:614d9722d572f6246302c4491846d2c393c199cfa4edc9af593437691683335b"
            ],
            "version": "==1.0.1"
        },
        "ics": {
            "hashes": [
                "sha256:5de36fd69983bb2d16a863c51ae1d02ccc3c1e407d39464d1360fac25697735e",
                "sha256:8220f6cefd3f53231e8953acbe073313f28314fecbe77d3ffebc8ceef6ad837c"
            ],
            "index": "pypi",
            "version": "==0.4"
        },
        "jdcal": {
            "hashes": [
                "sha256:948fb8d079e63b4be7a69dd5f0cd618a0a57e80753de8248fd786a8a20658a07",
                "sha256:ea0a5067c5f0f50ad4c7bdc80abad3d976604f6fb026b0b3a17a9d84bb9046c9"
            ],
            "version": "==1.4"
        },
        "openpyxl": {
            "hashes": [
                "sha256:022c0f3fa1e873cc0ba20651c54dd5e6276fc4ff150b4060723add4fc448645e"
            ],
            "index": "pypi",
            "version": "==2.5.9"
        },
        "python-dateutil": {
            "hashes": [
                "sha256:1adb80e7a782c12e52ef9a8182bebeb73f1d7e24e374397af06fb4956c8dc5c0",
                "sha256:e27001de32f627c22380a688bcc43ce83504a7bc5da472209b4c70f02829f0b8"
            ],
            "version": "==2.7.3"
        },
        "six": {
            "hashes": [
                "sha256:70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9",
                "sha256:832dc0e10feb1aa2c68dcc57dbb658f1c7e65b9b61af69048abc87a2db00a0eb"
            ],
            "version": "==1.11.0"
        }
    },
    "develop": {
        "alabaster": {
            "hashes": [
                "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359",
                "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"
            ],
            "version": "==0.7.12"
        },
        "argh": {
            "hashes": [
                "sha256:a9b3aaa1904eeb78e32394cd46c6f37ac0fb4af6dc488daa58971bdc7d7fcaf3",
                "sha256:e9535b8c84dc9571a48999094fda7f33e63c3f1b74f3e5f3ac0105a58405bb65"
            ],
            "version": "==0.26.2"
        },
        "babel": {
            "hashes": [
                "sha256:6778d85147d5d85345c14a26aada5e478ab04e39b078b0745ee6870c2b5cf669",
                "sha256:8cba50f48c529ca3fa18cf81fa9403be176d374ac4d60738b839122dfaaa3d23"
            ],
            "version": "==2.6.0"
        },
        "bleach": {
            "hashes": [
                "sha256:48d39675b80a75f6d1c3bdbffec791cf0bbbab665cf01e20da701c77de278718",
                "sha256:73d26f018af5d5adcdabf5c1c974add4361a9c76af215fe32fdec8a6fc5fb9b9"
            ],
            "version": "==3.0.2"
        },
        "bumpversion": {
            "hashes": [
                "sha256:6744c873dd7aafc24453d8b6a1a0d6d109faf63cd0cd19cb78fd46e74932c77e",
                "sha256:6753d9ff3552013e2130f7bc03c1007e24473b4835952679653fb132367bdd57"
            ],
            "index": "pypi",
            "version": "==0.5.3"
        },
        "certifi": {
            "hashes": [
                "sha256:339dc09518b07e2fa7eda5450740925974815557727d6bd35d319c1524a04a4c",
                "sha256:6d58c986d22b038c8c0df30d639f23a3e6d172a05c3583e766f4c0b785c0986a"
            ],
            "version": "==2018.10.15"
        },
        "cffi": {
            "hashes": [
                "sha256:151b7eefd035c56b2b2e1eb9963c90c6302dc15fbd8c1c0a83a163ff2c7d7743",
                "sha256:1553d1e99f035ace1c0544050622b7bc963374a00c467edafac50ad7bd276aef",
                "sha256:1b0493c091a1898f1136e3f4f991a784437fac3673780ff9de3bcf46c80b6b50",
                "sha256:2ba8a45822b7aee805ab49abfe7eec16b90587f7f26df20c71dd89e45a97076f",
                "sha256:3bb6bd7266598f318063e584378b8e27c67de998a43362e8fce664c54ee52d30",
                "sha256:3c85641778460581c42924384f5e68076d724ceac0f267d66c757f7535069c93",
                "sha256:3eb6434197633b7748cea30bf0ba9f66727cdce45117a712b29a443943733257",
                "sha256:495c5c2d43bf6cebe0178eb3e88f9c4aa48d8934aa6e3cddb865c058da76756b",
                "sha256:4c91af6e967c2015729d3e69c2e51d92f9898c330d6a851bf8f121236f3defd3",
                "sha256:57b2533356cb2d8fac1555815929f7f5f14d68ac77b085d2326b571310f34f6e",
                "sha256:770f3782b31f50b68627e22f91cb182c48c47c02eb405fd689472aa7b7aa16dc",
                "sha256:79f9b6f7c46ae1f8ded75f68cf8ad50e5729ed4d590c74840471fc2823457d04",
                "sha256:7a33145e04d44ce95bcd71e522b478d282ad0eafaf34fe1ec5bbd73e662f22b6",
                "sha256:857959354ae3a6fa3da6651b966d13b0a8bed6bbc87a0de7b38a549db1d2a359",
                "sha256:87f37fe5130574ff76c17cab61e7d2538a16f843bb7bca8ebbc4b12de3078596",
                "sha256:95d5251e4b5ca00061f9d9f3d6fe537247e145a8524ae9fd30a2f8fbce993b5b",
                "sha256:9d1d3e63a4afdc29bd76ce6aa9d58c771cd1599fbba8cf5057e7860b203710dd",
                "sha256:a36c5c154f9d42ec176e6e620cb0dd275744aa1d804786a71ac37dc3661a5e95",
                "sha256:a6a5cb8809091ec9ac03edde9304b3ad82ad4466333432b16d78ef40e0cce0d5",
                "sha256:ae5e35a2c189d397b91034642cb0eab0e346f776ec2eb44a49a459e6615d6e2e",
                "sha256:b0f7d4a3df8f06cf49f9f121bead236e328074de6449866515cea4907bbc63d6",
                "sha256:b75110fb114fa366b29a027d0c9be3709579602ae111ff61674d28c93606acca",
                "sha256:ba5e697569f84b13640c9e193170e89c13c6244c24400fc57e88724ef610cd31",
                "sha256:be2a9b390f77fd7676d80bc3cdc4f8edb940d8c198ed2d8c0be1319018c778e1",
                "sha256:ca1bd81f40adc59011f58159e4aa6445fc585a32bb8ac9badf7a2c1aa23822f2",
                "sha256:d5d8555d9bfc3f02385c1c37e9f998e2011f0db4f90e250e5bc0c0a85a813085",
                "sha256:e55e22ac0a30023426564b1059b035973ec82186ddddbac867078435801c7801",
                "sha256:e90f17980e6ab0f3c2f3730e56d1fe9bcba1891eeea58966e89d352492cc74f4",
                "sha256:ecbb7b01409e9b782df5ded849c178a0aa7c906cf8c5a67368047daab282b184",
                "sha256:ed01918d545a38998bfa5902c7c00e0fee90e957ce036a4000a88e3fe2264917",
                "sha256:edabd457cd23a02965166026fd9bfd196f4324fe6032e866d0f3bd0301cd486f",
                "sha256:fdf1c1dc5bafc32bc5d08b054f94d659422b05aba244d6be4ddc1c72d9aa70fb"
            ],
            "version": "==1.11.5"
        },
        "chardet": {
            "hashes": [
                "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae",
                "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691"
            ],
            "version": "==3.0.4"
        },
        "cmarkgfm": {
            "hashes": [
                "sha256:0186dccca79483e3405217993b83b914ba4559fe9a8396efc4eea56561b74061",
                "sha256:1a625afc6f62da428df96ec325dc30866cc5781520cbd904ff4ec44cf018171c",
                "sha256:207b7673ff4e177374c572feeae0e4ef33be620ec9171c08fd22e2b796e03e3d",
                "sha256:275905bb371a99285c74931700db3f0c078e7603bed383e8cf1a09f3ee05a3de",
                "sha256:50098f1c4950722521f0671e54139e0edc1837d63c990cf0f3d2c49607bb51a2",
                "sha256:50ed116d0b60a07df0dc7b180c28569064b9d37d1578d4c9021cff04d725cb63",
                "sha256:61a72def110eed903cd1848245897bcb80d295cd9d13944d4f9f30cba5b76655",
                "sha256:64186fb75d973a06df0e6ea12879533b71f6e7ba1ab01ffee7fc3e7534758889",
                "sha256:665303d34d7f14f10d7b0651082f25ebf7107f29ef3d699490cac16cdc0fc8ce",
                "sha256:70b18f843aec58e4e64aadce48a897fe7c50426718b7753aaee399e72df64190",
                "sha256:761ee7b04d1caee2931344ac6bfebf37102ffb203b136b676b0a71a3f0ea3c87",
                "sha256:811527e9b7280b136734ed6cb6845e5fbccaeaa132ddf45f0246cbe544016957",
                "sha256:987b0e157f70c72a84f3c2f9ef2d7ab0f26c08f2bf326c12c087ff9eebcb3ff5",
                "sha256:9fc6a2183d0a9b0974ec7cdcdad42bd78a3be674cc3e65f87dd694419b3b0ab7",
                "sha256:a3d17ee4ae739fe16f7501a52255c2e287ac817cfd88565b9859f70520afffea",
                "sha256:ba5b5488719c0f2ced0aa1986376f7baff1a1653a8eb5fdfcf3f84c7ce46ef8d",
                "sha256:c573ea89dd95d41b6d8cf36799c34b6d5b1eac4aed0212dee0f0a11fb7b01e8f",
                "sha256:c5f1b9e8592d2c448c44e6bc0d91224b16ea5f8293908b1561de1f6d2d0658b1",
                "sha256:cbe581456357d8f0674d6a590b1aaf46c11d01dd0a23af147a51a798c3818034",
                "sha256:cf219bec69e601fe27e3974b7307d2f06082ab385d42752738ad2eb630a47d65",
                "sha256:cf5014eb214d814a83a7a47407272d5db10b719dbeaf4d3cfe5969309d0fcf4b",
                "sha256:d08bad67fa18f7e8ff738c090628ee0cbf0505d74a991c848d6d04abfe67b697",
                "sha256:d6f716d7b1182bf35862b5065112f933f43dd1aa4f8097c9bcfb246f71528a34",
                "sha256:e08e479102627641c7cb4ece421c6ed4124820b1758765db32201136762282d9",
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            ],
            "index": "pypi",
            "version": "==0.32.2"
        }
    }
}

[ROldford]

It seems I'd misunderstood how to use pipenv graph. It wasn't showing my [dependencies] when running inside the shell environment. Outside, it showed my module itself as a dependency, with the items in [dependencies] under that in the module's graph tree.

This does seem like an unintuitive way for pipenv graph to work. Should the documentation be updated?

[techalchemy]

Yes for sure, would definitely love to accept a PR on that!

[frostming]

I couldn't catch what is the problem here. It is not how pipenv graph intends to work.

With this Pipfile:

[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"

[dev-packages]
flake8 = "*"

[packages]
requests = "*"

Install all deps by pipenv install -d and I can get the correct result:

$ pipenv graph
flake8==3.6.0
  - mccabe [required: >=0.6.0,<0.7.0, installed: 0.6.1]
  - pycodestyle [required: >=2.4.0,<2.5.0, installed: 2.4.0]
  - pyflakes [required: >=2.0.0,<2.1.0, installed: 2.0.0]
  - setuptools [required: >=30, installed: 40.5.0]
requests==2.20.1
  - certifi [required: >=2017.4.17, installed: 2018.10.15]
  - chardet [required: >=3.0.2,<3.1.0, installed: 3.0.4]
  - idna [required: >=2.5,<2.8, installed: 2.7]
  - urllib3 [required: >=1.21.1,<1.25, installed: 1.24.1]

How do you install those dependencies, can you verify the result against the output of pipenv run pip list?

[ROldford]

In the normal workflow, I work in the pipenv shell, so installations happen there via pipenv install. (IIRC, this is the workflow demonstrated in the documentation.)

I'd expect that running pipenv graph in the shell would show all dependencies (regular and development), but only development dependencies show up. However, when running pipenv graph outside the shell, all dependencies show up as normal.

[frostming]

I highly suspect this is a bug with pipdeptree that it generates an incomplete deps list.(I also encountered this problem). However, pipenv graph should always list all deps.

I would like to close your PR if you are fine with it.

[techalchemy]

This issue is resolved in #3298, thanks for your patience