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Merged
merged 2 commits into from
Oct 25, 2024
Merged

Automatically set hostname_localhost #433

merged 2 commits into from
Oct 25, 2024

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jan-janssen
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@jan-janssen jan-janssen commented Oct 25, 2024

Summary by CodeRabbit

Release Notes

  • New Features

    • Enhanced flexibility for the hostname_localhost parameter across multiple classes and functions, allowing it to accept None as a valid value.
    • Improved documentation and examples in the Jupyter notebook for better understanding of the executorlib.Executor.
  • Bug Fixes

    • Adjusted handling of the hostname_localhost parameter in various test cases to simplify instantiation of the Executor.
  • Documentation

    • Updated markdown cells in the Jupyter notebook to clarify the functionality and parameters of the executorlib.Executor.
  • Tests

    • Streamlined test configurations by removing the hostname_localhost parameter from several test methods, ensuring tests focus on core functionality.

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coderabbitai bot commented Oct 25, 2024

Walkthrough

The pull request modifies the hostname_localhost parameter across multiple files in the executorlib module, changing its type from bool with a default value of False to Optional[bool] with a default value of None. This adjustment affects the Executor class constructor, various functions, and methods in the library, enhancing flexibility in how the parameter is utilized. Additionally, several test files are updated to reflect these changes by removing the hostname_localhost argument from instantiations of the Executor class, while maintaining the overall structure and functionality of the tests.

Changes

File Change Summary
executorlib/__init__.py Updated hostname_localhost in __init__ and __new__ methods from bool to Optional[bool].
executorlib/interactive/__init__.py Changed hostname_localhost in create_executor from bool to Optional[bool].
executorlib/shared/communication.py Updated hostname_localhost in interface_bootup to Optional[bool], modified bootup method to use list[str], and clarified shutdown method's wait parameter.
executorlib/shared/executor.py Changed hostname_localhost in multiple task execution methods to Optional[bool].
notebooks/examples.ipynb Updated hostname_localhost from False to None in Executor initialization and resource allocation.
tests/test_dependencies_executor.py Removed hostname_localhost=True from Executor instantiation in multiple test methods.
tests/test_executor_backend_mpi.py Removed hostname_localhost=True from Executor instantiation in several test cases.
tests/test_executor_backend_mpi_noblock.py Removed hostname_localhost from Executor initialization in multiple test methods.
tests/test_integration_pyiron_workflow.py Removed hostname_localhost=True from Executor constructor in various test methods.
tests/test_local_executor.py Removed "hostname_localhost": True from executor_kwargs in numerous test methods.
tests/test_local_executor_future.py Removed hostname_localhost from executor_kwargs in three test methods.

Possibly related PRs

  • Remove conda support in executorlib #418: The changes in the main PR regarding the hostname_localhost parameter being changed to Optional[bool] are related to the broader context of removing conda support in the executorlib, as both involve modifications to the Executor class and its parameters.

Poem

In the burrows deep, where the code does play,
A change was made, in a subtle way.
hostname_localhost, now free to roam,
With None as a choice, it finds a new home.
So hop along, dear friends, and celebrate,
For flexibility's here, and it's truly great! 🐇✨


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Actionable comments posted: 1

🧹 Outside diff range and nitpick comments (12)
executorlib/shared/communication.py (2)

124-124: Update docstring to reflect Optional type

The parameter type has changed from boolean to Optional[bool], but the docstring still describes it as boolean. Please update the docstring to accurately reflect the new type and default behavior.

-        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+        hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
-                                      option to true
+                                      option to true. Defaults to True on macOS and False otherwise.

144-147: Consider using a constant for the platform check

The platform-specific logic is well-implemented, but consider extracting the platform string to a constant for better maintainability.

+MACOS_PLATFORM = "darwin"
+
 def interface_bootup(
     command_lst: list[str],
     connections,
     hostname_localhost: Optional[bool] = None,
 ):
     # ...
-    if hostname_localhost is None and sys.platform == "darwin":
+    if hostname_localhost is None and sys.platform == MACOS_PLATFORM:
         hostname_localhost = True
     elif hostname_localhost is None:
         hostname_localhost = False
tests/test_integration_pyiron_workflow.py (1)

77-77: Document the default hostname behavior in test environment.

Since we're removing explicit hostname configuration from these integration tests, it would be valuable to document the expected default behavior in the test environment. This helps maintain test isolation and makes the test setup more transparent.

Consider adding a comment in the test class docstring explaining:

  • The default hostname behavior in the test environment
  • How test isolation is maintained without explicit hostname configuration
  • Any assumptions about the test environment

Also applies to: 107-107, 138-138, 162-162, 192-192, 221-221

executorlib/interactive/__init__.py (1)

Line range hint 64-71: Update docstring to reflect the new optional behavior.

The docstring should be updated to explain:

  1. What happens when hostname_localhost is set to None
  2. How the automatic hostname selection works

Consider updating it like this:

-        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+        hostname_localhost (Optional[bool]): Controls whether to use localhost instead of the hostname for zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an Executor
                                      running on a different compute node within the same allocation. And in principle
                                      any computer should be able to resolve that their own hostname points to the same
                                      address as localhost. Still MacOS >= 12 seems to disable this look up for security
-                                      reasons. So on MacOS it is required to set this option to true
+                                      reasons. So on MacOS it is required to set this option to true. When set to None,
+                                      the appropriate value will be automatically determined based on the environment.
executorlib/__init__.py (2)

Line range hint 71-81: Update parameter type in docstring.

The docstring still describes hostname_localhost as boolean but the type has been changed to Optional[bool]. Please update the documentation to reflect this change and explain what None means in this context.

Apply this change to the docstring:

-        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+        hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
-                                     option to true
+                                     option to true. When set to None (default), the appropriate value will be
+                                     automatically determined based on the system configuration.

Line range hint 164-174: Update parameter type in new docstring.

The docstring in __new__ also needs to be updated to match the new parameter type.

Apply similar changes to the __new__ docstring:

-            hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+            hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
-                                     option to true
+                                     option to true. When set to None (default), the appropriate value will be
+                                     automatically determined based on the system configuration.
tests/test_local_executor.py (2)

Line range hint 1-476: Add test coverage for new Optional[bool] behavior

With the change of hostname_localhost from bool to Optional[bool], we should ensure comprehensive test coverage. Consider adding test cases to verify:

  1. Behavior when hostname_localhost is explicitly set to None
  2. Behavior when hostname_localhost is explicitly set to True/False
  3. Behavior when hostname_localhost is not provided (default case)

Example test method to add:

def test_hostname_localhost_behavior(self):
    # Test default behavior (None)
    with InteractiveExecutor(
        max_workers=1,
        executor_kwargs={},
        spawner=MpiExecSpawner,
    ) as exe:
        self.assertIsNone(exe.info["hostname_localhost"])
    
    # Test explicit True
    with InteractiveExecutor(
        max_workers=1,
        executor_kwargs={"hostname_localhost": True},
        spawner=MpiExecSpawner,
    ) as exe:
        self.assertTrue(exe.info["hostname_localhost"])
    
    # Test explicit False
    with InteractiveExecutor(
        max_workers=1,
        executor_kwargs={"hostname_localhost": False},
        spawner=MpiExecSpawner,
    ) as exe:
        self.assertFalse(exe.info["hostname_localhost"])

Based on the search results, I can now provide a final response:

Test cases need to be updated for Optional[bool] hostname_localhost behavior

The review comment is correct. The test cases need to be updated because:

  1. The implementation in executorlib/shared/communication.py shows that hostname_localhost is now Optional[bool] with platform-specific defaults:
    • None becomes True on MacOS (darwin)
    • None becomes False on other platforms
  2. Current test cases in test_local_executor.py only test with True, missing coverage for:
    • The None default value behavior
    • Platform-specific default resolution
    • The False value behavior

Suggested updates:

  • Add test cases for hostname_localhost=None to verify platform-specific defaults
  • Add test cases for hostname_localhost=False
  • Consider adding platform-specific test variations
🔗 Analysis chain

Line range hint 334-348: Verify test coverage for Optional[bool] hostname_localhost

The test_meta and test_meta_step methods still assert that hostname_localhost is True, which seems inconsistent with the change to make it Optional[bool]. Consider:

  1. Adding test cases to verify behavior when hostname_localhost is None
  2. Updating these test methods to reflect the new default value

Let's check if there are any other test files that might cover this:

Also applies to: 366-380


Let me gather more information about the hostname_localhost usage and its behavior:


Let me try a different approach to gather information:

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for other test files that might test hostname_localhost behavior
rg -l "hostname_localhost" "tests/"

Length of output: 62


Script:

#!/bin/bash
# Check the actual implementation and type definition of hostname_localhost
rg -A 5 -B 5 "hostname_localhost" --type python

Length of output: 78


Script:

#!/bin/bash
# Search for hostname_localhost in all files without file type restriction
rg -A 5 -B 5 "hostname_localhost"

# Also check for any type hints or class definitions related to this
ast-grep --pattern 'class $_ {
  $$$
  hostname_localhost
  $$$
}'

Length of output: 27317

executorlib/shared/executor.py (3)

305-307: Update docstring to reflect Optional[bool] type

The docstring still describes hostname_localhost as boolean, but the type has been changed to Optional[bool].

Update the parameter description in the docstring:

-       hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+       hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the

361-362: Update docstring to reflect Optional[bool] type

The docstring still describes hostname_localhost as boolean, but the type has been changed to Optional[bool].

Update the parameter description in the docstring:

-       hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+       hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the

608-608: Update docstring to reflect Optional[bool] type

The docstring still describes hostname_localhost as boolean, but the type has been changed to Optional[bool].

Update the parameter description in the docstring:

-        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
+        hostname_localhost (Optional[bool]): use localhost instead of the hostname to establish the zmq connection. In the
notebooks/examples.ipynb (1)

752-761: Documentation needs clarification.

The new section about hostname_localhost parameter could be improved:

  1. It doesn't explain what happens when the parameter is set to None (the new default).
  2. It should clarify when users need to explicitly set this parameter to True.

Consider expanding the documentation with this diff:

-introduced.
+introduced. When set to:
+- `None` (default): Automatically determines the appropriate hostname handling
+- `True`: Forces connection to localhost, useful for strict firewall settings
+- `False`: Uses the system hostname for connections
+
+This parameter is particularly relevant for MacOS users with strict firewall settings
+who may encounter connection issues with the default hostname-based communication.
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between bdeed77 and 4d16c36.

📒 Files selected for processing (11)
  • executorlib/init.py (2 hunks)
  • executorlib/interactive/init.py (1 hunks)
  • executorlib/shared/communication.py (3 hunks)
  • executorlib/shared/executor.py (3 hunks)
  • notebooks/examples.ipynb (3 hunks)
  • tests/test_dependencies_executor.py (2 hunks)
  • tests/test_executor_backend_mpi.py (2 hunks)
  • tests/test_executor_backend_mpi_noblock.py (0 hunks)
  • tests/test_integration_pyiron_workflow.py (6 hunks)
  • tests/test_local_executor.py (18 hunks)
  • tests/test_local_executor_future.py (4 hunks)
💤 Files with no reviewable changes (1)
  • tests/test_executor_backend_mpi_noblock.py
🔇 Additional comments (17)
tests/test_executor_backend_mpi.py (1)

35-35: LGTM! Parameter removal maintains test coverage.

The removal of hostname_localhost parameter is appropriate here as well. The test continues to effectively verify single-core execution behavior.

tests/test_local_executor_future.py (3)

23-23: LGTM! Appropriate simplification of executor configuration.

The removal of hostname_localhost from executor_kwargs aligns with the PR's objective while maintaining the test's core functionality of validating Future behavior in a serial context.


39-39: LGTM! Appropriate simplification while preserving multi-core test functionality.

The removal of hostname_localhost from executor_kwargs maintains the test's essential purpose of validating Future behavior in a multi-core context.


71-71: LGTM! Appropriate simplification while preserving Future lifecycle tests.

The removal of hostname_localhost from executor_kwargs maintains the test's primary purpose of validating Future independence from Executor lifecycle, both in main process and class-based contexts.

Also applies to: 111-111

tests/test_dependencies_executor.py (2)

128-128: LGTM! Consistent with the parameter removal pattern.

The change follows the same pattern of removing the explicit hostname_localhost parameter, maintaining consistency across the test suite.


44-44: LGTM! Removal of hostname_localhost parameter aligns with PR objective.

The change simplifies the Executor instantiation while maintaining test functionality, which validates that the parameter is now correctly optional.

Let's verify the test coverage for the hostname_localhost parameter:

✅ Verification successful

LGTM! Removal of hostname_localhost parameter is safe and aligns with the codebase.

The search results confirm:

  • The hostname_localhost parameter is now correctly defined as Optional[bool] with default None in the Executor class
  • The parameter is properly documented in the class docstring, explaining its purpose for HPC cluster and MacOS compatibility
  • Test coverage exists in test_local_executor.py which verifies the parameter behavior
  • The removal of explicit parameter in the test is safe as it now uses the default value
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify test coverage for hostname_localhost parameter
# Test: Search for any remaining explicit hostname_localhost tests
rg -l 'hostname_localhost.*=.*(?:True|False)' 'tests/'

# Test: Check if there are any test assertions related to hostname
rg -l 'assert.*hostname.*localhost' 'tests/'

Length of output: 99


Script:

#!/bin/bash
# Let's try a broader search to understand the test coverage
# Search for any mentions of hostname_localhost in tests
rg -A 3 'hostname_localhost' tests/

# Search for Executor instantiations in tests to see the parameter usage pattern
rg -A 2 'Executor\(' tests/

# Check the Executor class definition to understand the parameter
ast-grep --pattern 'class Executor:
  $$$
  def __init__($$$):
    $$$'

Length of output: 32281

executorlib/shared/communication.py (2)

3-3: LGTM: Import addition is correct

The Optional type import is properly added to support the type hint changes.


124-124: Verify consistent usage of hostname_localhost parameter

Let's verify that all callers of interface_bootup are compatible with the new Optional type.

✅ Verification successful

Let me gather more information about the parameter usage.


Let me check one more thing to see the complete function definition and its usage.


Optional type for hostname_localhost parameter is correctly implemented and used

The verification shows that:

  • The parameter is properly defined with Optional[bool] type
  • It has a default value of None
  • The implementation handles the None case appropriately with platform-specific logic
  • The only caller in executor.py passes the parameter correctly
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for all calls to interface_bootup to verify parameter usage
rg -l "interface_bootup\(" | xargs rg -A 2 "interface_bootup\("

Length of output: 756


Script:

#!/bin/bash
# Get the function definition and its usage context
ast-grep --pattern 'def interface_bootup($$$)' -A 20 executorlib/shared/communication.py

# Get the actual call site with more context
ast-grep --pattern 'interface = interface_bootup($$$)' -A 10 executorlib/shared/executor.py

Length of output: 1399


Script:

#!/bin/bash
# Get the complete function definition
rg -A 30 "^def interface_bootup" executorlib/shared/communication.py

Length of output: 1623

tests/test_integration_pyiron_workflow.py (2)

107-107: LGTM! Changes are consistent across all test methods.

The removal of the explicit hostname_localhost parameter is consistent throughout the test file and aligns with making the parameter optional. The core test objectives for dynamic object behavior remain unaffected.

Also applies to: 138-138, 162-162, 192-192, 221-221


77-77: Consider adding test coverage for hostname_localhost behavior.

While removing the explicit hostname_localhost parameter aligns with the PR's objective, we should ensure there's adequate test coverage for the new Optional[bool] behavior.

Let's check if there are dedicated tests for this functionality:

executorlib/interactive/__init__.py (2)

43-43: LGTM: Parameter type change is well-implemented.

The change from bool = False to Optional[bool] = None is appropriate and aligns with the PR objective.


Line range hint 93-97: Verify executor implementations handle None value correctly.

The hostname_localhost parameter is passed directly to executor_kwargs. Let's verify that the executor implementations properly handle the None value.

✅ Verification successful

Let me gather more information about how the hostname_localhost parameter is used in the codebase.


Based on the search results, I can now provide a conclusive response about the handling of the hostname_localhost parameter:

The hostname_localhost parameter is properly handled with safe defaults

The parameter is handled in executorlib/shared/communication.py with clear default behavior:

  • For MacOS (darwin), it defaults to True
  • For all other platforms, it defaults to False
  • When explicitly set, the value is respected

The implementation in interface_bootup function shows proper null-safety:

if hostname_localhost is None and sys.platform == "darwin":
    hostname_localhost = True
elif hostname_localhost is None:
    hostname_localhost = False
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check how executor implementations handle hostname_localhost parameter

# Search for hostname_localhost parameter usage in executor classes
echo "Searching for hostname_localhost usage in executor implementations..."
rg -l "hostname_localhost" --type python

# Look for specific handling of None value
echo "\nChecking None value handling..."
ast-grep --pattern 'hostname_localhost = $$$' 

Length of output: 494


Script:

#!/bin/bash
# Search for hostname_localhost usage with context
echo "Searching for hostname_localhost usage with context..."
rg -C 5 "hostname_localhost" 

# Search for executor class definitions that might use this parameter
echo "\nSearching for executor class definitions..."
ast-grep --pattern 'class $_Executor'

# Search for executor initialization patterns
echo "\nSearching for executor initialization patterns..."
ast-grep --pattern '$_ = $_Executor($$$)'

Length of output: 27660

executorlib/__init__.py (2)

106-106: LGTM: Parameter type change enhances flexibility.

The change from bool to Optional[bool] with a None default is a good improvement that allows for automatic detection of when to use localhost.

Also applies to: 130-130


106-106: Verify the parameter usage across the codebase.

Let's verify that all related files handle the None value appropriately.

Also applies to: 130-130

✅ Verification successful

Based on the results, I can now provide the final response:

The hostname_localhost parameter is properly handled across the codebase

The parameter is consistently defined as Optional[bool] across all relevant files and the None value is properly handled in executorlib/shared/communication.py with clear default logic:

  • For MacOS (darwin): defaults to True when None
  • For other platforms: defaults to False when None

This is also well documented in the examples notebook where it's marked as "only required on MacOS".

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check how hostname_localhost is used across the codebase

# Test 1: Find all occurrences of hostname_localhost parameter
echo "=== hostname_localhost parameter declarations ==="
rg -A 1 "hostname_localhost.*?[:=]"

# Test 2: Find logic that handles the None case
echo -e "\n=== None value handling logic ==="
rg "hostname_localhost.*?None"

Length of output: 6934

tests/test_local_executor.py (1)

66-66: LGTM: Consistent removal of hostname_localhost parameter

The removal of the hostname_localhost parameter from executor_kwargs across all test methods is consistent with making it optional. Since we're falling back to the default value, this simplification of the test cases is appropriate.

Also applies to: 80-80, 96-96, 110-110, 129-129, 140-140, 160-160, 175-175, 186-186, 206-206, 259-259, 274-274, 287-287, 303-303, 313-313, 322-322, 391-391, 409-409

executorlib/shared/executor.py (1)

305-307: Verify None handling in interface_bootup

The hostname_localhost parameter is now optional, but we need to ensure that interface_bootup properly handles the None case.

✅ Verification successful

Let me gather more context about the interface_bootup implementation to verify the None handling.


hostname_localhost parameter is properly handled

The implementation in interface_bootup correctly handles the None case for hostname_localhost:

  • When None and on MacOS (darwin), it defaults to True
  • When None and not on MacOS, it defaults to False
  • The value is then used to determine whether to append hostname-related arguments to the command list
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for interface_bootup implementation to verify None handling
rg -A 10 "def interface_bootup" 

Length of output: 778


Script:

#!/bin/bash
# Get more context of interface_bootup implementation
rg -A 30 "def interface_bootup" executorlib/shared/communication.py

Length of output: 1622

notebooks/examples.ipynb (1)

224-224: LGTM: Parameter updates are consistent.

The changes to hostname_localhost=None in both the Executor initialization and resource dictionary are consistent with the PR objectives.

Also applies to: 246-246

with Executor(
max_cores=2, hostname_localhost=True, backend="local", block_allocation=True
) as exe:
with Executor(max_cores=2, backend="local", block_allocation=True) as exe:
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💡 Codebase verification

Found inconsistency: hostname_localhost parameter still present in test_local_executor.py

The verification revealed that while hostname_localhost parameter was removed from test_executor_backend_mpi.py, it is still being used in test_local_executor.py in multiple test cases. This indicates an incomplete refactoring where:

  • The parameter is used in test metadata dictionaries
  • It's included in executor_kwargs configurations
  • The value is still being set to True in these cases

This needs to be addressed to maintain consistency with the refactoring where hostname_localhost was changed from bool to Optional[bool].

🔗 Analysis chain

LGTM! Removal of hostname_localhost parameter is consistent with the refactoring.

The change aligns with the broader refactoring effort where hostname_localhost was made optional. The test continues to verify the core functionality of serial execution with multiple cores.

Let's verify that all test files have been updated consistently:

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for any remaining hostname_localhost parameters in test files
# Expect: No test files should still be using the hostname_localhost parameter

rg -l 'hostname_localhost.*Executor' 'tests/'

Length of output: 45


Script:

#!/bin/bash
# Let's try a broader search to find any occurrences of hostname_localhost
rg -l "hostname_localhost" "tests/"

Length of output: 62


Script:

#!/bin/bash
# Let's also check the Executor instantiations in test files to ensure consistency
rg -A 2 "Executor\(" "tests/"

Length of output: 14304


Script:

#!/bin/bash
# Let's also check the actual Executor class definition
ast-grep --pattern 'class Executor {
  $$$
}'

Length of output: 47


Script:

#!/bin/bash
# Let's check the specific test_local_executor.py file that still contains hostname_localhost
rg -C 3 "hostname_localhost" "tests/test_local_executor.py"

Length of output: 1077


Script:

#!/bin/bash
# Let's also check the Executor class definition with a different pattern
ast-grep --pattern 'class Executor'

Length of output: 37

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