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Obey contiguity requests for buffer protocol
If a contiguous buffer is requested, and the underlying buffer isn't, then that should raise. This matches NumPy behaviour if you do something like: ``` struct.unpack_from('5d', np.arange(20.0)[::4]) # Raises for contiguity ``` Also, if a buffer is contiguous, then it can masquerade as a less-complex buffer, either by dropping strides, or even pretending to be 1D. This matches NumPy behaviour if you do something like: ``` a = np.full((3, 5), 30.0) struct.unpack_from('15d', a) # --> Produces 1D tuple from 2D buffer. ```
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3 files changed

+250
-7
lines changed

3 files changed

+250
-7
lines changed

include/pybind11/detail/class.h

Lines changed: 51 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -601,26 +601,70 @@ extern "C" inline int pybind11_getbuffer(PyObject *obj, Py_buffer *view, int fla
601601
set_error(PyExc_BufferError, "Writable buffer requested for readonly storage");
602602
return -1;
603603
}
604+
605+
// Fill in all the information, and then downgrade as requested by the caller, or raise an
606+
// error if that's not possible.
604607
view->obj = obj;
605-
view->ndim = 1; // See discussion on PR #5407.
606608
view->internal = info;
607609
view->buf = info->ptr;
608610
view->itemsize = info->itemsize;
609611
view->len = view->itemsize;
610612
for (auto s : info->shape) {
611613
view->len *= s;
612614
}
615+
view->ndim = (int) info->ndim;
616+
view->shape = info->shape.data();
617+
view->strides = info->strides.data();
613618
view->readonly = static_cast<int>(info->readonly);
614619
if ((flags & PyBUF_FORMAT) == PyBUF_FORMAT) {
615620
view->format = const_cast<char *>(info->format.c_str());
616621
}
617-
if ((flags & PyBUF_ND) == PyBUF_ND) {
618-
view->ndim = (int) info->ndim;
619-
view->shape = info->shape.data();
620-
}
621-
if ((flags & PyBUF_STRIDES) == PyBUF_STRIDES) {
622-
view->strides = info->strides.data();
622+
623+
// Note, all contiguity flags imply PyBUF_STRIDES and lower.
624+
if ((flags & PyBUF_C_CONTIGUOUS) == PyBUF_C_CONTIGUOUS) {
625+
if (PyBuffer_IsContiguous(view, 'C') == 0) {
626+
std::memset(view, 0, sizeof(Py_buffer));
627+
delete info;
628+
set_error(PyExc_BufferError,
629+
"C-contiguous buffer requested for discontiguous storage");
630+
return -1;
631+
}
632+
} else if ((flags & PyBUF_F_CONTIGUOUS) == PyBUF_F_CONTIGUOUS) {
633+
if (PyBuffer_IsContiguous(view, 'F') == 0) {
634+
std::memset(view, 0, sizeof(Py_buffer));
635+
delete info;
636+
set_error(PyExc_BufferError,
637+
"Fortran-contiguous buffer requested for discontiguous storage");
638+
return -1;
639+
}
640+
} else if ((flags & PyBUF_ANY_CONTIGUOUS) == PyBUF_ANY_CONTIGUOUS) {
641+
if (PyBuffer_IsContiguous(view, 'A') == 0) {
642+
std::memset(view, 0, sizeof(Py_buffer));
643+
delete info;
644+
set_error(PyExc_BufferError, "Contiguous buffer requested for discontiguous storage");
645+
return -1;
646+
}
647+
648+
// If no strides are requested, the buffer must be C-contiguous.
649+
// https://docs.python.org/3/c-api/buffer.html#contiguity-requests
650+
} else if ((flags & PyBUF_STRIDES) != PyBUF_STRIDES) {
651+
if (PyBuffer_IsContiguous(view, 'C') == 0) {
652+
std::memset(view, 0, sizeof(Py_buffer));
653+
delete info;
654+
set_error(PyExc_BufferError,
655+
"C-contiguous buffer requested for discontiguous storage");
656+
return -1;
657+
}
658+
659+
view->strides = nullptr;
660+
661+
// Since this is a contiguous buffer, it can also pretend to be 1D.
662+
if ((flags & PyBUF_ND) != PyBUF_ND) {
663+
view->shape = nullptr;
664+
view->ndim = 1;
665+
}
623666
}
667+
624668
Py_INCREF(view->obj);
625669
return 0;
626670
}

tests/test_buffers.cpp

Lines changed: 122 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -167,6 +167,125 @@ TEST_SUBMODULE(buffers, m) {
167167
sizeof(float)});
168168
});
169169

170+
// A matrix that uses Fortran storage order.
171+
class FortranMatrix : public Matrix {
172+
public:
173+
FortranMatrix(py::ssize_t rows, py::ssize_t cols) : Matrix(cols, rows) {
174+
print_created(this,
175+
std::to_string(rows) + "x" + std::to_string(cols) + " Fortran matrix");
176+
}
177+
178+
float operator()(py::ssize_t i, py::ssize_t j) const { return Matrix::operator()(j, i); }
179+
180+
float &operator()(py::ssize_t i, py::ssize_t j) { return Matrix::operator()(j, i); }
181+
182+
using Matrix::data;
183+
184+
py::ssize_t rows() const { return Matrix::cols(); }
185+
py::ssize_t cols() const { return Matrix::rows(); }
186+
};
187+
py::class_<FortranMatrix, Matrix>(m, "FortranMatrix", py::buffer_protocol())
188+
.def(py::init<py::ssize_t, py::ssize_t>())
189+
190+
.def("rows", &FortranMatrix::rows)
191+
.def("cols", &FortranMatrix::cols)
192+
193+
/// Bare bones interface
194+
.def("__getitem__",
195+
[](const FortranMatrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
196+
if (i.first >= m.rows() || i.second >= m.cols()) {
197+
throw py::index_error();
198+
}
199+
return m(i.first, i.second);
200+
})
201+
.def("__setitem__",
202+
[](FortranMatrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
203+
if (i.first >= m.rows() || i.second >= m.cols()) {
204+
throw py::index_error();
205+
}
206+
m(i.first, i.second) = v;
207+
})
208+
/// Provide buffer access
209+
.def_buffer([](FortranMatrix &m) -> py::buffer_info {
210+
return py::buffer_info(m.data(), /* Pointer to buffer */
211+
{m.rows(), m.cols()}, /* Buffer dimensions */
212+
/* Strides (in bytes) for each index */
213+
{sizeof(float), sizeof(float) * size_t(m.rows())});
214+
});
215+
216+
// A matrix that uses a discontiguous underlying memory block.
217+
class DiscontiguousMatrix : public Matrix {
218+
public:
219+
DiscontiguousMatrix(py::ssize_t rows,
220+
py::ssize_t cols,
221+
py::ssize_t row_factor,
222+
py::ssize_t col_factor)
223+
: Matrix(rows * row_factor, cols * col_factor), m_row_factor(row_factor),
224+
m_col_factor(col_factor) {
225+
print_created(this,
226+
std::to_string(rows) + "(*" + std::to_string(row_factor) + ")x"
227+
+ std::to_string(cols) + "(*" + std::to_string(col_factor)
228+
+ ") matrix");
229+
}
230+
231+
~DiscontiguousMatrix() {
232+
print_destroyed(this,
233+
std::to_string(rows() / m_row_factor) + "(*"
234+
+ std::to_string(m_row_factor) + ")x"
235+
+ std::to_string(cols() / m_col_factor) + "(*"
236+
+ std::to_string(m_col_factor) + ") matrix");
237+
}
238+
239+
float operator()(py::ssize_t i, py::ssize_t j) const {
240+
return Matrix::operator()(i * m_row_factor, j * m_col_factor);
241+
}
242+
243+
float &operator()(py::ssize_t i, py::ssize_t j) {
244+
return Matrix::operator()(i * m_row_factor, j * m_col_factor);
245+
}
246+
247+
using Matrix::data;
248+
249+
py::ssize_t rows() const { return Matrix::rows() / m_row_factor; }
250+
py::ssize_t cols() const { return Matrix::cols() / m_col_factor; }
251+
py::ssize_t row_factor() const { return m_row_factor; }
252+
py::ssize_t col_factor() const { return m_col_factor; }
253+
254+
private:
255+
py::ssize_t m_row_factor;
256+
py::ssize_t m_col_factor;
257+
};
258+
py::class_<DiscontiguousMatrix, Matrix>(m, "DiscontiguousMatrix", py::buffer_protocol())
259+
.def(py::init<py::ssize_t, py::ssize_t, py::ssize_t, py::ssize_t>())
260+
261+
.def("rows", &DiscontiguousMatrix::rows)
262+
.def("cols", &DiscontiguousMatrix::cols)
263+
264+
/// Bare bones interface
265+
.def("__getitem__",
266+
[](const DiscontiguousMatrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
267+
if (i.first >= m.rows() || i.second >= m.cols()) {
268+
throw py::index_error();
269+
}
270+
return m(i.first, i.second);
271+
})
272+
.def("__setitem__",
273+
[](DiscontiguousMatrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
274+
if (i.first >= m.rows() || i.second >= m.cols()) {
275+
throw py::index_error();
276+
}
277+
m(i.first, i.second) = v;
278+
})
279+
/// Provide buffer access
280+
.def_buffer([](DiscontiguousMatrix &m) -> py::buffer_info {
281+
return py::buffer_info(m.data(), /* Pointer to buffer */
282+
{m.rows(), m.cols()}, /* Buffer dimensions */
283+
/* Strides (in bytes) for each index */
284+
{size_t(m.col_factor()) * sizeof(float) * size_t(m.cols())
285+
* size_t(m.row_factor()),
286+
size_t(m.col_factor()) * sizeof(float)});
287+
});
288+
170289
class BrokenMatrix : public Matrix {
171290
public:
172291
BrokenMatrix(py::ssize_t rows, py::ssize_t cols) : Matrix(rows, cols) {}
@@ -274,6 +393,9 @@ TEST_SUBMODULE(buffers, m) {
274393
m.attr("PyBUF_ND") = PyBUF_ND;
275394
m.attr("PyBUF_STRIDES") = PyBUF_STRIDES;
276395
m.attr("PyBUF_INDIRECT") = PyBUF_INDIRECT;
396+
m.attr("PyBUF_C_CONTIGUOUS") = PyBUF_C_CONTIGUOUS;
397+
m.attr("PyBUF_F_CONTIGUOUS") = PyBUF_F_CONTIGUOUS;
398+
m.attr("PyBUF_ANY_CONTIGUOUS") = PyBUF_ANY_CONTIGUOUS;
277399

278400
m.def("get_py_buffer", [](const py::object &object, int flags) {
279401
Py_buffer buffer;

tests/test_buffers.py

Lines changed: 77 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -276,3 +276,80 @@ def test_to_pybuffer():
276276
assert info.strides == [4 * info.itemsize, info.itemsize]
277277
assert info.suboffsets is None # Should be filled in here, but we don't use it.
278278
assert not info.readonly
279+
280+
# A Fortran-shaped buffer can only be accessed at PyBUF_STRIDES level or higher.
281+
mat = m.FortranMatrix(5, 4)
282+
info = m.get_py_buffer(mat, m.PyBUF_STRIDES)
283+
assert info.itemsize == ctypes.sizeof(ctypes.c_float)
284+
assert info.len == mat.rows() * mat.cols() * info.itemsize
285+
assert info.ndim == 2
286+
assert info.shape == [5, 4]
287+
assert info.strides == [info.itemsize, 5 * info.itemsize]
288+
assert info.suboffsets is None
289+
assert not info.readonly
290+
info = m.get_py_buffer(mat, m.PyBUF_INDIRECT)
291+
assert info.itemsize == ctypes.sizeof(ctypes.c_float)
292+
assert info.len == mat.rows() * mat.cols() * info.itemsize
293+
assert info.ndim == 2
294+
assert info.shape == [5, 4]
295+
assert info.strides == [info.itemsize, 5 * info.itemsize]
296+
assert info.suboffsets is None # Should be filled in here, but we don't use it.
297+
assert not info.readonly
298+
299+
mat = m.DiscontiguousMatrix(5, 4, 2, 3)
300+
info = m.get_py_buffer(mat, m.PyBUF_STRIDES)
301+
assert info.itemsize == ctypes.sizeof(ctypes.c_float)
302+
assert info.len == mat.rows() * mat.cols() * info.itemsize
303+
assert info.ndim == 2
304+
assert info.shape == [5, 4]
305+
assert info.strides == [2 * 4 * 3 * info.itemsize, 3 * info.itemsize]
306+
assert info.suboffsets is None
307+
assert not info.readonly
308+
309+
310+
def test_to_pybuffer_contiguity():
311+
def check_strides(mat):
312+
# The full block is memset to 0, so fill it with non-zero in real spots.
313+
expected = np.arange(1, mat.rows() * mat.cols() + 1).reshape(
314+
(mat.rows(), mat.cols())
315+
)
316+
for i in range(mat.rows()):
317+
for j in range(mat.cols()):
318+
mat[i, j] = expected[i, j]
319+
# If all strides are correct, the exposed buffer should match the input.
320+
np.testing.assert_array_equal(np.array(mat), expected)
321+
322+
mat = m.Matrix(5, 4)
323+
check_strides(mat)
324+
# Should work in C-contiguous mode, but not Fortran order.
325+
m.get_py_buffer(mat, m.PyBUF_C_CONTIGUOUS)
326+
m.get_py_buffer(mat, m.PyBUF_ANY_CONTIGUOUS)
327+
with pytest.raises(BufferError):
328+
m.get_py_buffer(mat, m.PyBUF_F_CONTIGUOUS)
329+
330+
mat = m.FortranMatrix(5, 4)
331+
check_strides(mat)
332+
# These flags imply C-contiguity, so won't work.
333+
with pytest.raises(BufferError):
334+
m.get_py_buffer(mat, m.PyBUF_SIMPLE)
335+
with pytest.raises(BufferError):
336+
m.get_py_buffer(mat, m.PyBUF_ND)
337+
# Should work in Fortran-contiguous mode, but not C order.
338+
with pytest.raises(BufferError):
339+
m.get_py_buffer(mat, m.PyBUF_C_CONTIGUOUS)
340+
m.get_py_buffer(mat, m.PyBUF_ANY_CONTIGUOUS)
341+
m.get_py_buffer(mat, m.PyBUF_F_CONTIGUOUS)
342+
343+
mat = m.DiscontiguousMatrix(5, 4, 2, 3)
344+
check_strides(mat)
345+
# Should never work.
346+
with pytest.raises(BufferError):
347+
m.get_py_buffer(mat, m.PyBUF_SIMPLE)
348+
with pytest.raises(BufferError):
349+
m.get_py_buffer(mat, m.PyBUF_ND)
350+
with pytest.raises(BufferError):
351+
m.get_py_buffer(mat, m.PyBUF_C_CONTIGUOUS)
352+
with pytest.raises(BufferError):
353+
m.get_py_buffer(mat, m.PyBUF_ANY_CONTIGUOUS)
354+
with pytest.raises(BufferError):
355+
m.get_py_buffer(mat, m.PyBUF_F_CONTIGUOUS)

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