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test_pysteps.yml
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name: Test Pysteps
env:
MINIMAL_DEPENDENCIES: cython numpy jsmin jsonschema matplotlib netCDF4 opencv pillow pyproj scipy dask
OPTIONAL_DEPENDENCIES: pyfftw cartopy h5py PyWavelets pandas scikit-image
TEST_DEPENDENCIES: pytest pytest-cov
on:
# Triggers the workflow on push or pull request events but only for the master branch
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
unit_tests:
name: Unit Tests (${{ matrix.python-version }}, ${{ matrix.os }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ "ubuntu-latest", "macos-latest", "windows-latest" ]
python-version: [ "3.6", "3.8" ]
max-parallel: 6
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v2.0.0
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
activate-environment: test-environment
- name: Install dependencies
env:
PACKAGES: ${{env.MINIMAL_DEPENDENCIES}} ${{env.OPTIONAL_DEPENDENCIES}} ${{env.TEST_DEPENDENCIES}}
PYSTEPS_DATA_PATH: ${{github.workspace}}/pysteps_data
run: |
conda install --quiet ${{env.PACKAGES}}
pip install -U cookiecutter
- name: Install pysteps for MacOS
if: matrix.os == 'macos-latest'
working-directory: ${{github.workspace}}
env:
CC: gcc-9
CXX: g++-9
CXX1X: g++-9
HOMEBREW_NO_INSTALL_CLEANUP: 1
run: |
brew update-reset
brew update
brew install gcc@9
gcc-9 --version
pip install .
- name: Install pygrib (not win)
if: matrix.os != 'windows-latest'
run: conda install --quiet pygrib
- name: Install pysteps
if: matrix.os != 'macos-latest'
working-directory: ${{github.workspace}}
run: pip install .
- name: Download pysteps data
env:
PYSTEPS_DATA_PATH: ${{github.workspace}}/pysteps_data
working-directory: ${{github.workspace}}/ci
run: python fetch_pysteps_data.py
- name: Check imports
working-directory: ${{github.workspace}}/pysteps_data
run: |
python -c "import pysteps; print(pysteps.__file__)"
python -c "from pysteps import motion"
python -c "from pysteps.motion import vet"
python -c "from pysteps.motion import proesmans"
- name: Run tests and coverage report
working-directory: ${{github.workspace}}/pysteps_data
env:
PYSTEPSRC: ${{github.workspace}}/pysteps_data/pystepsrc
run: pytest --pyargs pysteps --cov=pysteps --cov-report=xml --cov-report=term -ra
- name: Upload coverage to Codecov (Linux only)
if: matrix.os == 'ubuntu-latest'
uses: codecov/codecov-action@v1
env:
OS: ${{ matrix.os }}
PYTHON: ${{ matrix.python-version }}
with:
file: ${{github.workspace}}/pysteps_data/coverage.xml
flags: unit_tests
env_vars: OS,PYTHON
fail_ci_if_error: true
verbose: true