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scplotter scplotter website

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Installation

remotes::install_github("pwwang/scplotter")
# or
devtools::install_github("pwwang/scplotter")
# or using conda
$ conda install pwwang::r-scplotter

Credits

scplotter is greatly inspired by the SCP package, where the visualization was detached from the analysis and implemented in the plotthis package. The scplotter package is built upon the plotthis package and provides a set of even higher-level functions to visualize single-cell sequencing data.

Gallery

CellDimPlot

CellDimPlot

CellStatPlot

CellStatPlot

ClustreePlot

ClustreePlot

FeatureStatPlot

FeatureStatPlot

EnrichmentPlot

EnrichmentPlot

GSEASummaryPlot | GSEAPlot

GSEAPlot

VolcanoPlot

VolcanoPlot