The MPI Bioinformatics Toolkit is a platform that integrates a great variety of tools for protein sequence analysis. Many tools are developed in-house, and several public tools are offered with extended functionality.
The toolkit includes, among others: PSI-BLAST+, HHblits, HMMER; MUSCLE, MAFFT, ProbCons; HHrepID, PCOILS;HHpred, Modeller; CLANS, ANCESCON, PhyML; RetrieveSeq, HHfilter.
Coming soon.
The code is available under the Apache 2.0 license.