From 43c33e474ba4e70567b72486037feca669eee28f Mon Sep 17 00:00:00 2001 From: Andreas Untergasser Date: Sat, 17 Aug 2019 05:54:30 +0200 Subject: [PATCH] Updated version for release 2.5.0 --- src/libprimer3.cc | 2 +- src/primer3_manual.htm | 4 ++-- src/release_notes.txt | 24 ++++++++++++++++++++++++ test/cmd_test3_output | 2 +- test/cmd_test5_output | 2 +- test/p3test.pl | 2 +- test/primer_global_err/empty_1.out2 | 2 +- 7 files changed, 31 insertions(+), 7 deletions(-) diff --git a/src/libprimer3.cc b/src/libprimer3.cc index 5f809a0a..c192e38d 100644 --- a/src/libprimer3.cc +++ b/src/libprimer3.cc @@ -485,7 +485,7 @@ static void op_set_does_not_amplify_orf(primer_rec *); /* Global static variables. */ static const char *primer3_copyright_char_star = "\n" -"Copyright (c) 1996-2017\n" +"Copyright (c) 1996-2019\n" "Whitehead Institute for Biomedical Research, Steve Rozen\n" "(http://purl.com/STEVEROZEN/), Andreas Untergasser and Helen Skaletsky\n" "All rights reserved.\n" diff --git a/src/primer3_manual.htm b/src/primer3_manual.htm index 9c47729d..366596ef 100644 --- a/src/primer3_manual.htm +++ b/src/primer3_manual.htm @@ -3,7 +3,7 @@ - Primer3 Release 2.4.0 Manual + Primer3 Release 2.5.0 Manual
-

PRIMER3 RELEASE 2.4.0 MANUAL

+

PRIMER3 RELEASE 2.5.0 MANUAL

CONTENTS

1. COPYRIGHT AND LICENSE
2. INTRODUCTION
diff --git a/src/release_notes.txt b/src/release_notes.txt index 25b18c84..a735c375 100644 --- a/src/release_notes.txt +++ b/src/release_notes.txt @@ -1,3 +1,27 @@ +release 2.5.0 2019-08-17 =============================================== +This release adds new features to primer3_core and related C code. + +The primer3_config files for thermodynamic calculations are embedded in the +code and the primer3_config/ folder is not required any more for default +settings. + +If PRIMER_SECONDARY_STRUCTURE_ALIGNMENT=1 is set, the secondary structure +will be displayed as string representation (for example): +PRIMER_LEFT_0_SELF_ANY_STUCT=5' ATTCGATTCTCCCCGGTATC 3'\n ||||\n 3' CTATGGCCCCTCTTAGCTTA 5'\n +for the structure: +5' ATTCGATTCTCCCCGGTATC 3' + |||| + 3' CTATGGCCCCTCTTAGCTTA 5' + + +Minor fixes: +1. Primer3 can handle windows newlines on input files. + +2. A bug in the compl_end calculations was fixed. + +3. The primer3_config/ folder is not required any more. + + release 2.4.0 2017-11-03 =============================================== This release adds a new feature to primer3_core and related C code. diff --git a/test/cmd_test3_output b/test/cmd_test3_output index fbf4a93b..88c920b1 100644 --- a/test/cmd_test3_output +++ b/test/cmd_test3_output @@ -1,5 +1,5 @@ -Copyright (c) 1996-2017 +Copyright (c) 1996-2019 Whitehead Institute for Biomedical Research, Steve Rozen (http://purl.com/STEVEROZEN/), Andreas Untergasser and Helen Skaletsky All rights reserved. diff --git a/test/cmd_test5_output b/test/cmd_test5_output index fbf4a93b..88c920b1 100644 --- a/test/cmd_test5_output +++ b/test/cmd_test5_output @@ -1,5 +1,5 @@ -Copyright (c) 1996-2017 +Copyright (c) 1996-2019 Whitehead Institute for Biomedical Research, Steve Rozen (http://purl.com/STEVEROZEN/), Andreas Untergasser and Helen Skaletsky All rights reserved. diff --git a/test/p3test.pl b/test/p3test.pl index 398c69f6..3406c477 100755 --- a/test/p3test.pl +++ b/test/p3test.pl @@ -94,7 +94,7 @@ () # select STDERR; $| = 1; - print "$0 for primer3_core version 2.4.0\n"; + print "$0 for primer3_core version 2.5.0\n"; $all_ok = 1; my $overall_start_time = time(); diff --git a/test/primer_global_err/empty_1.out2 b/test/primer_global_err/empty_1.out2 index fbf4a93b..88c920b1 100644 --- a/test/primer_global_err/empty_1.out2 +++ b/test/primer_global_err/empty_1.out2 @@ -1,5 +1,5 @@ -Copyright (c) 1996-2017 +Copyright (c) 1996-2019 Whitehead Institute for Biomedical Research, Steve Rozen (http://purl.com/STEVEROZEN/), Andreas Untergasser and Helen Skaletsky All rights reserved.