python-pninexus/.github/workflows/tests.yml at develop · pni-libraries/python-pninexus · GitHub

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name: Test Package

on:
  push:
  pull_request:
  schedule:
    - cron: '30 0 23 * *'

jobs:

  flake8_tests:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2
        with:
          python-version: '3.x'
      - name: Install flake8
        run: pip install flake8
      - name: Run flake8
        run: flake8 .

  linux_tests:
    runs-on: ubuntu-latest
    container:
      image: debian:trixie
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2

      - name: install pixi
        shell: bash
        run: |
          apt-get update
          apt-get -qq -y dist-upgrade
          apt-get -qq update && apt-get install  -qq  -y flake8 python3 curl bash
          curl -fsSL https://pixi.sh/install.sh | sh
          export PATH=/github/home/.pixi/bin:$PATH
          pixi shell-hook > .sh.sh
          source .sh.sh
          pixi add rattler-build compilers
      - name: build pninexus
        shell: bash
        run: |
          source .sh.sh
          pixi run rattler-build build  --recipe .github/workflows/pixi/recipe.yaml

  macos-15_tests:
    runs-on: macos-15
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2

      - name: install pixi
        shell: bash
        run: |
          curl -fsSL https://pixi.sh/install.sh | sh
          export PATH=/Users/runner/.pixi/bin:$PATH
          pixi shell-hook > .sh.sh
          source .sh.sh
          pixi add rattler-build
      - name: build pninexus
        shell: bash
        run: |
          source .sh.sh
          pixi run rattler-build build  --recipe .github/workflows/pixi/recipe.yaml

  windows-2025_tests:
    runs-on: windows-2025
    steps:
      - uses: actions/checkout@v4
      - uses: prefix-dev/setup-pixi@v0.9.4
        with:
          pixi-version: v0.62.2
          cache: false
      - name: build pninexus
        run: |
          pixi add rattler-build compilers libboost-headers=1.88.0 h5cpp libpninexus libboost=1.88.0  libboost-python=1.88.0 hdf5=1.14.6
          pixi run rattler-build build  --recipe .github/workflows/pixi/recipe.yaml

  deb_tests:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        os: [debian13, debian12, debian11, ubuntu25.10, ubuntu24.04, ubuntu22.04]
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2

      - name: Build the docker
        env:
          OS: ${{ matrix.os }}
        run: docker build -t ndts .ci/${OS}_py3

      - name: Run the docker
        run: docker run --name  ndts -d -it -v `pwd`:/home/tango  ndts

      - name: install python-pninexus
        run: .ci/install.sh 3

      - name: run tests
        run: .ci/run.sh 3

      - name: Append documentation for the latest release version
        if: github.ref == 'refs/heads/develop' &&  matrix.os == 'debian13'
        run: |
             docker  exec ndts /bin/bash -c "cp doc/index.html doc/_config.yml build"
             docker  exec ndts /bin/bash -c "git config remote.origin.fetch '+refs/heads/*:refs/remotes/origin/*'"
             docker  exec ndts /bin/bash -c "git fetch && git checkout gh-pages && git pull"
             docker  exec ndts /bin/bash -c "mkdir -p ./latest && shopt -u dotglob && rm -rf ./latest/*"
             docker  exec ndts /bin/bash -c "mv -f build/sphinx/html/* ./latest/"
             docker  exec ndts /bin/bash -c "mv -f build/index.html build/_config.yml ."
             # docker  exec ndts /bin/bash -c "mv -f build/devel ./latest/api/doxygen"
             docker  exec ndts /bin/bash -c "rm -rf ./latest/_sources"
             docker  exec --user root ndts /bin/bash -c "rm -rf build build_tools *.h5 src test"

      - name: Extract the code version from the branch name
        if: startsWith(github.ref, 'refs/heads/docs_') && matrix.os == 'debian13'
        shell: bash
        run: echo "##[set-output name=docver;]$(echo ${GITHUB_REF#refs/heads/docs_})"
        id: extract_docver

      - name: Append documentation for the extracted release version
        if: startsWith(github.ref, 'refs/heads/docs_') &&  matrix.os == 'debian13'
        run: |
             echo Version: ${{ steps.extract_docver.outputs.docver }}
             docker  exec ndts /bin/bash -c "git config remote.origin.fetch '+refs/heads/*:refs/remotes/origin/*'"
             docker  exec ndts /bin/bash -c "git fetch && git checkout gh-pages && git pull"
             docker  exec ndts /bin/bash -c "mkdir -p ./${{ steps.extract_docver.outputs.docver }}"
             docker  exec ndts /bin/bash -c "shopt -u dotglob && rm -rf ./${{ steps.extract_docver.outputs.docver }}/* "
             docker  exec ndts /bin/bash -c "mv -f build/sphinx/html/* ./${{ steps.extract_docver.outputs.docver }}/"
             # docker  exec ndts /bin/bash -c "mv -f build/devel ./${{ steps.extract_docver.outputs.docver }}/api/doxygen"
             docker  exec ndts /bin/bash -c "rm -rf ./${{ steps.extract_docver.outputs.docver }}/_sources"
             docker  exec  --user root  ndts /bin/bash -c "rm -rf build build_tools *.h5 src test"

      - name: Deploy documentation
        if: (github.ref == 'refs/heads/develop' || startsWith(github.ref, 'refs/heads/docs_'))  &&  matrix.os == 'debian13'
        uses: s0/git-publish-subdir-action@develop
        env:
          REPO: self
          BRANCH: gh-pages
          FOLDER: .
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          MESSAGE: "Build: ({sha}) {msg}"

      - name: Stop the docker
        run: |
             docker exec  --user root ndts  /bin/bash -c "chown -R 1001 /home/tango "
             docker container stop ndts