Merge pull request #75 from platforma-open/julenmendieta/quickStdoutSavingFix

Julenmendieta/quickStdoutSavingFix

Author: OlSu11

.changeset/plenty-years-remain.md

@@ -0,0 +1,5 @@
+---
+'@platforma-open/milaboratories.clonotype-clustering.workflow': patch
+---
+
+Fix StdoutStream

workflow/src/clustering.tpl.tengo

@@ -145,6 +145,7 @@ self.body(func(inputs) {
             arg("--similarity-type").arg(similarityType == "sequence-identity" ? "2" : "1").
             addFile("input.fasta", fasta.getFile("output.fasta")).
             saveFile("result_cluster.tsv").
+            saveStdoutStream().
             run()
 
         clusters := mmseqs.getFile("result_cluster.tsv")

workflow/src/main.tpl.tengo

@@ -101,8 +101,6 @@ wf.body(func(args) {
 			arg("--input-separator").arg("\t").
 			saveFileContent("isFileEmpty.txt").
 			printErrStreamToStdout().
-			saveStdoutContent().
-			cache(24 * 60 * 60 * 1000).
 			run()
 
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