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  1. linsalrob/partie linsalrob/partie Public

    PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE …

    Perl 25 5

  2. metagenomics_tutorial metagenomics_tutorial Public

    Analyzing shotgun data

    HTML 6 2

  3. Bioinformatics-BC Bioinformatics-BC Public

    New to Bioinformatics? Start Here!

    Jupyter Notebook 3 3

  4. 16S_amplicon_preprocessing_code 16S_amplicon_preprocessing_code Public

    Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code

    Jupyter Notebook 3

  5. Viral_metagenomics Viral_metagenomics Public

    Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation

    Python 2

  6. statistics_notes statistics_notes Public

    Jupyter Notebook 1