Fixed

Author: dantleech

src/PHPCR/Shell/Console/Application/EmbeddedApplication.php

@@ -39,6 +39,8 @@ public function __construct($mode)
         $container = new Container($this->mode);
         parent::__construct($container, SessionApplication::APP_NAME, SessionApplication::APP_VERSION);
         $this->setAutoExit(false);
+
+        // @deprecated This will be removed in 1.0
         $this->getHelperSet()->set(new PhpcrHelper($container->get('phpcr.session_manager')));
     }
 

src/PHPCR/Shell/DependencyInjection/Container.php

@@ -19,7 +19,7 @@ class Container extends ContainerBuilder
     protected $transports = array(
         'transport.transport.doctrinedbal' => 'PHPCR\Shell\Transport\Transport\DoctrineDbal',
         'transport.transport.jackrabbit' => 'PHPCR\Shell\Transport\Transport\Jackrabbit',
-        'transport.transport.fs' => 'PHPCR\Shell\Transport\Transport\JackrabbitFs',
+        'transport.transport.fs' => 'PHPCR\Shell\Transport\Transport\JackalopeFs',
     );
 
     public function __construct($mode = self::MODE_STANDALONE)