diff --git a/CHANGELOG.md b/CHANGELOG.md index 7d7e267..c6a43f0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,23 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## v1.1.0 - [Unreleased] + +### `Added` +- Input schema JSON and validation +- FORMAT_INPUT workflow + - Handles the input data now +- `nf-schema@2.0.0` plugin + +### `Changed` +- `--input SAMPLESHEET_CSV` header + - Went from `reads` with path to barcode directories to `fastq_1` with path to fastq files +- Fixed bug so that SNPEff will now work with given gff files + - Issue was typo related in the build module +- Fixed bug with `calc_bam_variation` caused by genome case +- Log and error statements +- Fixed the cache directory statements + ## v1.0.0 - [2024-03-22] Initial release of `phac-nml/viralassembly`, created from combining the [nf-core](https://nf-co.re/) template with the artic steps. diff --git a/nextflow.config b/nextflow.config index 8f6afc9..f47f722 100644 --- a/nextflow.config +++ b/nextflow.config @@ -246,7 +246,7 @@ manifest { description = """Assemble and QC viral reads""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.0.0' + version = '1.1.0' doi = '' defaultBranch = 'main' }