phac-nml/viralassembly: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v1.1.0 - [Unreleased]

`Added`

Input schema JSON and validation
FORMAT_INPUT workflow
- Handles the input data now
nf-schema@2.0.0 plugin

`Changed`

--input SAMPLESHEET_CSV header
- Went from reads with path to barcode directories to fastq_1 with path to fastq files
Fixed bug so that SNPEff will now work with given gff files
- Issue was typo related in the build module
Fixed bug with calc_bam_variation caused by genome case
Log and error statements
Fixed the cache directory statements

v1.0.0 - [2024-03-22]

Initial release of phac-nml/viralassembly, created from combining the nf-core template with the artic steps.

`Added`

All initial pipeline features and logic
All initial docs and images