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.gzip compressed reference file gives error #18

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ChristyPeterson opened this issue Mar 27, 2024 · 0 comments
Open

.gzip compressed reference file gives error #18

ChristyPeterson opened this issue Mar 27, 2024 · 0 comments
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@ChristyPeterson
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Description of the bug

Giving compressed fasta for a reference generates an error.

Command used and terminal output

ERROR ~ ERROR: Validation of pipeline parameters failed!

 -- Check '.nextflow.log' file for details
The following invalid input values have been detected:

* --refgenome: string [/PATH/TO/S1_1_filtered.fasta.gz] does not match pattern ^\S+\.(fa|fas|fasta)$ (/PATH/TO/S1_1_filtered.fasta.gz)

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