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Update envs to work with strict channel prio
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6 files changed

+8
-9
lines changed

6 files changed

+8
-9
lines changed

envs/abricate.yaml

Lines changed: 1 addition & 1 deletion
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@@ -1,7 +1,7 @@
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name: abricate
22
channels:
3-
- defaults
43
- conda-forge
54
- bioconda
5+
- defaults
66
dependencies:
77
- abricate=1.0.1

envs/ariba.yaml

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@@ -1,7 +1,7 @@
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name: ariba
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channels:
3-
- defaults
43
- conda-forge
54
- bioconda
5+
- defaults
66
dependencies:
77
- ariba=2.14.6

envs/csstar.yaml

Lines changed: 3 additions & 3 deletions
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@@ -1,10 +1,10 @@
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name: csstar
22
channels:
3-
- bioconda
43
- conda-forge
4+
- bioconda
55
- defaults
66
dependencies:
77
- biopython
88
- nomkl
9-
- python=2.7.18
10-
- blast=2.10.1
9+
- python<3.0
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- blast

envs/groot.yaml

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@@ -1,9 +1,8 @@
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name: groot
22
channels:
3-
- bioconda/label/cf201901
4-
- defaults
53
- conda-forge
64
- bioconda
5+
- defaults
76
dependencies:
87
- seqkit
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- groot=1.1.2

envs/hamronization_workflow.yaml

Lines changed: 1 addition & 1 deletion
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@@ -4,4 +4,4 @@ channels:
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- bioconda
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- defaults
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dependencies:
7-
- snakemake=8.25.5
7+
- snakemake=8.26.0

envs/staramr.yaml

Lines changed: 1 addition & 1 deletion
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name: staramr
22
channels:
3-
- defaults
43
- conda-forge
54
- bioconda
5+
- defaults
66
dependencies:
77
- staramr=0.7.2
88
- pandas==1.2.5

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