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@Article{ akaike1974,
added-at = {2012-04-11T20:11:58.000+0200},
author = {Akaike, H.},
biburl = {https://www.bibsonomy.org/bibtex/29363085c55faa7f810272e728a7f4935/jabreftest},
groups = {public},
interhash = {1e2509091dcc7474052e2ffdb5bbb51f},
intrahash = {9363085c55faa7f810272e728a7f4935},
journal = {IEEE Transactions on Automatic Control},
keywords = {},
number = 6,
pages = {716--723},
timestamp = {2012-04-11T20:11:58.000+0200},
title = {A new look at the statistical model identification},
username = {jabreftest},
volume = 19,
year = 1974
}
@Article{ anderson2017c,
title = {Black-Swan Events in Animal Populations},
author = {Anderson, Sean C. and Branch, Trevor A. and Cooper, Andrew B.
and Dulvy, Nicholas K.},
year = {2017},
journal = {Proceedings of the National Academy of Sciences},
volume = {114},
number = {12},
pages = {3252--3257}
}
@Article{ anderson2019,
title = {Black Swans in Space: Modelling Spatiotemporal Processes with
Extremes},
author = {Anderson, Sean C. and Ward, Eric J.},
year = {2019},
volume = {100},
pages = {e02403},
doi = {10.1002/ecy.2403},
journal = {Ecology},
language = {en},
number = {1}
}
@Article{ anderson2019b,
title = {A Reproducible Data Synopsis for over 100 Species of
{{British Columbia}} Groundfish},
author = {Anderson, S.C. and Keppel, E. A. and Edwards, A. M.},
year = {2019},
journal = {DFO Can. Sci. Advis. Sec. Res. Doc.},
volume = {2019/041},
pages = {vii + 321 p},
annotation = {2019/041}
}
@Book{ anderson2020,
title = {sdmTMB: Spatiotemporal species distribution GLMMs with
'TMB'},
author = {{Anderson}, {Sean C.} and {English}, {Philina A.} and {Ward},
{Eric J.}},
year = {2020},
date = {2020},
note = {R package version 0.0.4.9000}
}
@Article{ bachl2019,
title = {{inlabru}: An {{R}} Package for {{Bayesian}} Spatial
Modelling from Ecological Survey Data},
author = {Bachl, Fabian E. and Lindgren, Finn and Borchers, David L.
and Illian, Janine B.},
year = {2019},
journal = {Methods Ecol. Evol.},
volume = {10},
number = {6},
pages = {760--766},
doi = {10.1111/2041-210X.13168},
langid = {english},
annotation = {\_eprint:
https://onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.13168}
}
@Article{ bakka2018review,
title = {Spatial modeling with R-INLA: A review},
author = {Bakka, Haakon and Rue, H{\aa}vard and Fuglstad, Geir-Arne and
Riebler, Andrea and Bolin, David and Illian, Janine and
Krainski, Elias and Simpson, Daniel and Lindgren, Finn},
journal = {Wiley Interdisciplinary Reviews: Computational Statistics},
volume = {10},
number = {6},
pages = {e1443},
year = {2018},
publisher = {Wiley Online Library}
}
@Article{ bakka2019,
title = {Non-Stationary {{Gaussian}} Models with Physical Barriers},
author = {Bakka, Haakon and Vanhatalo, Jarno and Illian, Janine and
Simpson, Daniel and Rue, H{\aa}vard},
year = {2019},
journal = {arXiv:1608.03787 [stat]},
eprint = {1608.03787},
eprinttype = {arxiv},
primaryclass = {stat},
archiveprefix = {arXiv}
}
@Article{ banerjee2008,
title = {Gaussian Predictive Process Models for Large Spatial Data
Sets},
author = {Banerjee, Sudipto and Gelfand, Alan E. and Finley, Andrew O.
and Sang, Huiyan},
year = {2008},
journal = {J. R. Stat. Soc. Ser. B Stat. Methodol.},
volume = {70},
number = {4},
pages = {825--848}
}
@Article{ barnett2021,
title = {Improving Estimates of Species Distribution Change by
Incorporating Local Trends},
author = {Barnett, Lewis A. K. and Ward, Eric J. and Anderson, Sean
C.},
year = {2021},
journal = {Ecography},
volume = {44},
number = {3},
pages = {427--439},
doi = {10.1111/ecog.05176},
copyright = {\textcopyright{} 2020 The Authors. Ecography published by
John Wiley \& Sons Ltd on behalf of Nordic Society Oikos},
langid = {english},
annotation = {\_eprint:
https://onlinelibrary.wiley.com/doi/pdf/10.1111/ecog.05176}
}
@Article{ barrowman2000,
title = {Still more spawner-recruitment curves: the hockey stick and
its generalizations},
author = {Barrowman, N. and Myers, Ransom A.},
year = {2000},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
volume = {57},
pages = {665-676},
keywords = {bibdesk}
}
@Article{ bates2015,
title = {Fitting Linear Mixed-Effects Models Using {lme4}},
author = {Bates, Douglas and M{\"a}chler, Martin and Bolker, Ben and
Walker, Steve},
year = {2015},
journal = {Journal of Statistical Software},
volume = {67},
number = {1},
pages = {1--48},
doi = {10.18637/jss.v067.i01}
}
@Book{ blangiardo2015book,
title = {Spatial and spatio-temporal Bayesian models with {R-INLA}},
author = {Blangiardo, Marta and Cameletti, Michela},
year = {2015},
publisher = {John Wiley \& Sons}
}
@Article{ breivik2021,
title = {Predicting abundance indices in areas without coverage with a
latent spatio-temporal Gaussian model},
author = {{Breivik}, {Olav Nikolai} and {Aanes}, {Fredrik} and
{Søvik}, {Guldborg} and {Aglen}, {Asgeir} and {Mehl},
{Sigbjørn} and {Johnsen}, {Espen}},
editor = {{Kotwicki}, {Stan}},
year = {2021},
month = {06},
date = {2021-06-14},
journal = {ICES Journal of Marine Science},
pages = {fsab073},
doi = {10.1093/icesjms/fsab073},
langid = {en}
}
@Article{ brms,
title = {{brms}: An {R} Package for {Bayesian} Multilevel Models Using
{Stan}},
author = {Paul-Christian Bürkner},
journal = {Journal of Statistical Software},
year = {2017},
volume = {80},
number = {1},
pages = {1--28},
doi = {10.18637/jss.v080.i01},
encoding = {UTF-8}
}
@Article{ brodie2020,
title = {Trade-offs in covariate selection for species distribution
models: a methodological comparison},
author = {Brodie, Stephanie J and Thorson, James T and Carroll, Gemma
and Hazen, Elliott L and Bograd, Steven and Haltuch, Melissa A
and Holsman, Kirstin K and Kotwicki, Stan and Samhouri, Jameal
F and Willis-Norton, Ellen and others},
journal = {Ecography},
volume = {43},
number = {1},
pages = {11--24},
year = {2020},
publisher = {Wiley Online Library}
}
@Article{ brooks2017,
title = {{{glmmTMB}} Balances Speed and Flexibility among Packages for
Zero-Inflated Generalized Linear Mixed Modeling},
author = {Brooks, Mollie E. and Kristensen, Kasper and {van Benthem},
Koen J. and Magnusson, Arni and Berg, Casper W. and Nielsen,
Anders and Skaug, Hans J. and Maechler, Martin and Bolker,
Benjamin M.},
year = {2017},
journal = {The R Journal},
volume = {9},
number = {2},
pages = {378--400}
}
@Article{ burkner2017,
title = {{brms}: An {R} Package for {Bayesian} Multilevel Models Using
{Stan}},
author = {Paul-Christian Bürkner},
journal = {Journal of Statistical Software},
year = {2017},
volume = {80},
number = {1},
pages = {1--28},
doi = {10.18637/jss.v080.i01},
encoding = {UTF-8}
}
@Article{ burkner2018,
title = {Advanced {Bayesian} Multilevel Modeling with the {R} Package
{brms}},
author = {Paul-Christian Bürkner},
journal = {The R Journal},
year = {2018},
volume = {10},
number = {1},
pages = {395--411},
doi = {10.32614/RJ-2018-017},
encoding = {UTF-8}
}
@Article{ burkner2021,
title = {Bayesian Item Response Modeling in {R} with {brms} and
{Stan}},
author = {Paul-Christian Bürkner},
journal = {Journal of Statistical Software},
year = {2021},
volume = {100},
number = {5},
pages = {1--54},
doi = {10.18637/jss.v100.i05},
encoding = {UTF-8}
}
@Article{ camp2020,
title = {Using density surface models to estimate spatio-temporal
changes in population densities and trend},
author = {Camp, Richard J and Miller, David L and Thomas, Len and
Buckland, Stephen T and Kendall, Steve J},
journal = {Ecography},
volume = {43},
number = {7},
pages = {1079--1089},
year = {2020},
publisher = {Wiley Online Library}
}
@Article{ carpenter2017,
title = {Stan: A Probabilistic Programming Language},
author = {Carpenter, Bob and Gelman, Andrew and Hoffman, Matthew D. and
Lee, Daniel and Goodrich, Ben and Betancourt, Michael and
Brubaker, Marcus and Guo, Jiqiang and Li, Peter and Riddell,
Allen},
year = {2017},
journal = {Journal of Statistical Software},
volume = {76},
number = {1},
doi = {10.18637/jss.v076.i01}
}
@Misc{ cbc,
title = {The {Christmas} bird count historical results},
author = "{National Audubon Society}",
year = {2021},
url = {www.christmasbirdcount.org},
publisher = {National Audubon Society}
}
@Book{ chiles1999,
title = {Geostatistics: Modeling Spatial Uncertainty},
author = {Chil{\'e}s, Jean-Paul and Delfiner, Pierre},
year = {1999},
publisher = {{John Wiley \& Sons}}
}
@Book{ cressie1993,
title = {Statistics for Spatial Data},
author = {Cressie, Noel},
year = {1993},
publisher = {{John Wiley \& Sons}}
}
@Book{ cressie2011,
title = {Statistics for Spatio-Temporal Data},
author = {Cressie, Noel A. C. and Wikle, Christopher K.},
year = {2011},
series = {Wiley Series in Probability and Statistics},
publisher = {{Wiley}},
address = {{Hoboken, N.J}},
isbn = {978-0-471-69274-4},
lccn = {QA278.2 .C754 2011}
}
@Article{ cribari-neto2010,
title = {Beta Regression in {R}},
author = {Cribari-Neto, F. and Zeileis, Achim},
year = {2010},
journal = {Journal of Statistical Software},
volume = {34},
number = {2},
pages = {1-24},
uri = {papers://1942143A-778F-48A4-8CB0-693C041639FD/Paper/p2366},
keywords = {bibdesk}
}
@Article{ datta2016,
title = {Hierarchical Nearest-Neighbor {{Gaussian}} Process Models for
Large Geostatistical Datasets},
author = {Datta, Abhirup and Banerjee, Sudipto and Finley, Andrew O.
and Gelfand, Alan E.},
year = {2016},
journal = {J. Am. Stat. Assoc.},
volume = {111},
number = {514},
pages = {800--812},
publisher = {{Taylor \& Francis}},
doi = {10.1080/01621459.2015.1044091},
annotation = {\_eprint: https://doi.org/10.1080/01621459.2015.1044091}
}
@Manual{ dharma,
title = {DHARMa: Residual Diagnostics for Hierarchical
(Multi-Level/Mixed) Regression Models},
author = {Florian Hartig},
year = {2021},
note = {R package version 0.4.4},
url = {https://CRAN.R-project.org/package=DHARMa}
}
@Book{ diggle2007,
title = {Model-Based Geostatistics},
author = {Diggle, Peter J and Ribeiro, Paulo Justiniano},
year = {2007},
publisher = {{Springer}},
isbn = {978-0-387-48536-2}
}
@Article{ diniz-filho2003,
title = {Spatial Autocorrelation and Red Herrings in Geographical
Ecology},
author = {{Diniz-Filho}, Jos{\'e} Alexandre Felizola and Bini, Luis
Mauricio and Hawkins, Bradford A.},
year = {2003},
journal = {Glob. Ecol. Biogeogr.},
volume = {12},
number = {1},
pages = {53--64},
doi = {10.1046/j.1466-822X.2003.00322.x},
langid = {english},
annotation = {\_eprint:
https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1466-822X.2003.00322.x}
}
@Article{ dinnage2020,
title = {Spatiophylogenetic Modelling of Extinction Risk Reveals
Evolutionary Distinctiveness and Brief Flowering Period as
Threats in a Hotspot Plant Genus},
author = {Dinnage, Russell and Skeels, Alexander and Cardillo, Marcel},
year = {2020},
journal = {Proceedings of the Royal Society B: Biological Sciences},
volume = {287},
number = {1926},
pages = {20192817},
publisher = {{Royal Society}},
doi = {10.1098/rspb.2019.2817}
}
@Article{ dormann2007,
title = {Methods to account for spatial autocorrelation in the
analysis of species distributional data: a review},
volume = {30},
issn = {1600-0587},
doi = {10.1111/j.2007.0906-7590.05171.x},
number = {5},
journal = {Ecography},
author = {Dormann, Carsten F. and McPherson, Jana M. and Araújo,
Miguel B. and Bivand, Roger and Bolliger, Janine and Carl,
Gudrun and Davies, Richard G. and Hirzel, Alexandre and Jetz,
Walter and Kissling, W. Daniel and Kühn, Ingolf and
Ohlemüller, Ralf and Peres‐Neto, Pedro R. and Reineking,
Björn and Schröder, Boris and Schurr, Frank M. and Wilson,
Robert},
year = {2007},
pages = {609--628}
}
@Article{ dunn1996,
title = {Randomized {{Quantile Residuals}}},
author = {Dunn, Peter K. and Smyth, Gordon K.},
year = {1996},
journal = {Journal of Computational and Graphical Statistics},
volume = {5},
number = {3},
pages = {236--244},
doi = {10.1080/10618600.1996.10474708}
}
@Article{ dunn2005,
title = {Series Evaluation of {{Tweedie}} Exponential Dispersion Model
Densities},
author = {Dunn, Peter K. and Smyth, Gordon K.},
year = {2005},
journal = {Statistics and Computing},
volume = {15},
number = {4},
pages = {267--280},
doi = {10.1007/s11222-005-4070-y},
langid = {english}
}
@Article{ edwards2019,
title = {Some Guidance on Using Mathematical Notation in Ecology},
author = {Edwards, Andrew M. and {Auger-M{\'e}th{\'e}}, Marie},
year = {2019},
journal = {Methods in Ecology and Evolution},
volume = {10},
number = {1},
pages = {92--99}
}
@Article{ eilers1996,
author = {Paul H. C. Eilers and Brian D. Marx},
title = {{Flexible smoothing with B-splines and penalties}},
volume = {11},
journal = {Statistical Science},
number = {2},
publisher = {Institute of Mathematical Statistics},
pages = {89 -- 121},
keywords = {Density estimation, generalized linear models, nonparametric
models, smoothing, splines},
year = {1996},
doi = {10.1214/ss/1038425655}
}
@Article{ english2022,
title = {Contrasting climate velocity impacts in warm and cool
locations show that effects of marine warming are worse in
already warmer temperate waters},
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