From 4e1ca4176ece91301cf9b8dfbbf807ab61cc8da1 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 2 Sep 2024 10:34:10 +0000 Subject: [PATCH] Bump mambaorg/micromamba from 1.4.3 to 1.5.9 in /containers Bumps mambaorg/micromamba from 1.4.3 to 1.5.9. --- updated-dependencies: - dependency-name: mambaorg/micromamba dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- containers/cluster-profiler__v4.8.1.Dockerfile | 2 +- containers/comparative-analysis__v1.0.0.Dockerfile | 2 +- containers/cooltools__v0.5.4.Dockerfile | 2 +- containers/dchic__vd4eb244.Dockerfile | 2 +- containers/diff-expression-analysis__v1.0.0.Dockerfile | 2 +- containers/diffdomain__v1c4b3db.Dockerfile | 2 +- containers/hic-balancing__v1.0.1.Dockerfile | 2 +- containers/hic-breakfinder__v30a0dcc.Dockerfile | 4 ++-- containers/hicexplorer__v3.7.2.Dockerfile | 2 +- containers/hictrans__ve26ad6a.Dockerfile | 2 +- containers/hint__v2.2.8.Dockerfile | 2 +- containers/image-analysis__v1.0.0.Dockerfile | 2 +- containers/macs2__v2.2.9.1.Dockerfile | 2 +- containers/maxhic__vb553b8f.Dockerfile | 2 +- containers/microarray-analysis__v1.0.0.Dockerfile | 2 +- containers/plotting__v1.0.0.Dockerfile | 2 +- containers/pyutils__v1.0.1.Dockerfile | 2 +- containers/seqkit__v2.5.1.Dockerfile | 2 +- containers/wiggletools__v1.2.11.Dockerfile | 2 +- 19 files changed, 20 insertions(+), 20 deletions(-) diff --git a/containers/cluster-profiler__v4.8.1.Dockerfile b/containers/cluster-profiler__v4.8.1.Dockerfile index 5a8233b..c455a5f 100644 --- a/containers/cluster-profiler__v4.8.1.Dockerfile +++ b/containers/cluster-profiler__v4.8.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/comparative-analysis__v1.0.0.Dockerfile b/containers/comparative-analysis__v1.0.0.Dockerfile index 7d2df1d..f57594c 100644 --- a/containers/comparative-analysis__v1.0.0.Dockerfile +++ b/containers/comparative-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/cooltools__v0.5.4.Dockerfile b/containers/cooltools__v0.5.4.Dockerfile index 518c877..709c9bb 100644 --- a/containers/cooltools__v0.5.4.Dockerfile +++ b/containers/cooltools__v0.5.4.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/dchic__vd4eb244.Dockerfile b/containers/dchic__vd4eb244.Dockerfile index e6ffba9..92d432d 100644 --- a/containers/dchic__vd4eb244.Dockerfile +++ b/containers/dchic__vd4eb244.Dockerfile @@ -30,7 +30,7 @@ RUN apt-get update \ && chmod 755 dchic/dchicf.r -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/diff-expression-analysis__v1.0.0.Dockerfile b/containers/diff-expression-analysis__v1.0.0.Dockerfile index 68b604d..1582b68 100644 --- a/containers/diff-expression-analysis__v1.0.0.Dockerfile +++ b/containers/diff-expression-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/diffdomain__v1c4b3db.Dockerfile b/containers/diffdomain__v1c4b3db.Dockerfile index 03dc6a2..012db7d 100644 --- a/containers/diffdomain__v1c4b3db.Dockerfile +++ b/containers/diffdomain__v1c4b3db.Dockerfile @@ -19,7 +19,7 @@ RUN apt-get update \ && find diffdomain -type f -exec chmod uga+r {} + \ && find diffdomain -type d -exec chmod uga+rx {} + -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/hic-balancing__v1.0.1.Dockerfile b/containers/hic-balancing__v1.0.1.Dockerfile index 3dae617..e23fab2 100644 --- a/containers/hic-balancing__v1.0.1.Dockerfile +++ b/containers/hic-balancing__v1.0.1.Dockerfile @@ -61,7 +61,7 @@ RUN cd /tmp/hic2cool-ng*/ \ && cmake --install build -FROM mambaorg/micromamba:1.5.8-jammy AS base +FROM mambaorg/micromamba:1.5.9-jammy AS base ARG CONTAINER_TITLE ARG CONTAINER_VERSION diff --git a/containers/hic-breakfinder__v30a0dcc.Dockerfile b/containers/hic-breakfinder__v30a0dcc.Dockerfile index 35de9db..ef95d66 100644 --- a/containers/hic-breakfinder__v30a0dcc.Dockerfile +++ b/containers/hic-breakfinder__v30a0dcc.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS builder +FROM mambaorg/micromamba:1.5.9 AS builder ARG CONTAINER_VERSION @@ -33,7 +33,7 @@ RUN cd hic_breakfinder \ && make -j $(nproc) -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/hicexplorer__v3.7.2.Dockerfile b/containers/hicexplorer__v3.7.2.Dockerfile index ec82e48..3e42db8 100644 --- a/containers/hicexplorer__v3.7.2.Dockerfile +++ b/containers/hicexplorer__v3.7.2.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/hictrans__ve26ad6a.Dockerfile b/containers/hictrans__ve26ad6a.Dockerfile index de930ed..202b731 100644 --- a/containers/hictrans__ve26ad6a.Dockerfile +++ b/containers/hictrans__ve26ad6a.Dockerfile @@ -15,7 +15,7 @@ RUN apt-get update \ && git checkout "$HICTRANS_VERSION" -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/hint__v2.2.8.Dockerfile b/containers/hint__v2.2.8.Dockerfile index c1dd057..3f19b5d 100644 --- a/containers/hint__v2.2.8.Dockerfile +++ b/containers/hint__v2.2.8.Dockerfile @@ -12,7 +12,7 @@ RUN apt-get update \ && curl -L "$BICSEQ2_SEG_URL" | tar -xzf - -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/image-analysis__v1.0.0.Dockerfile b/containers/image-analysis__v1.0.0.Dockerfile index c2b828d..b36c1d6 100644 --- a/containers/image-analysis__v1.0.0.Dockerfile +++ b/containers/image-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION diff --git a/containers/macs2__v2.2.9.1.Dockerfile b/containers/macs2__v2.2.9.1.Dockerfile index 94dae2d..9804407 100644 --- a/containers/macs2__v2.2.9.1.Dockerfile +++ b/containers/macs2__v2.2.9.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/maxhic__vb553b8f.Dockerfile b/containers/maxhic__vb553b8f.Dockerfile index 55bc283..3015d33 100644 --- a/containers/maxhic__vb553b8f.Dockerfile +++ b/containers/maxhic__vb553b8f.Dockerfile @@ -21,7 +21,7 @@ RUN apt-get update \ RUN if [ -z "$CONTAINER_VERSION" ]; then echo "Missing CONTAINER_VERSION --build-arg" && exit 1; fi -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/microarray-analysis__v1.0.0.Dockerfile b/containers/microarray-analysis__v1.0.0.Dockerfile index 126b554..bde7a88 100644 --- a/containers/microarray-analysis__v1.0.0.Dockerfile +++ b/containers/microarray-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/plotting__v1.0.0.Dockerfile b/containers/plotting__v1.0.0.Dockerfile index 6c3cbdc..0cf181a 100644 --- a/containers/plotting__v1.0.0.Dockerfile +++ b/containers/plotting__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/pyutils__v1.0.1.Dockerfile b/containers/pyutils__v1.0.1.Dockerfile index 2a4ce25..99a4fda 100644 --- a/containers/pyutils__v1.0.1.Dockerfile +++ b/containers/pyutils__v1.0.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/seqkit__v2.5.1.Dockerfile b/containers/seqkit__v2.5.1.Dockerfile index e606204..dbc6eb1 100644 --- a/containers/seqkit__v2.5.1.Dockerfile +++ b/containers/seqkit__v2.5.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/wiggletools__v1.2.11.Dockerfile b/containers/wiggletools__v1.2.11.Dockerfile index 7aa00f6..78a8187 100644 --- a/containers/wiggletools__v1.2.11.Dockerfile +++ b/containers/wiggletools__v1.2.11.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.9 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1