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Commits on Mar 11, 2026

• Revise documentation and tutorials sections in README

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Commits on Mar 8, 2026

• Bump version: 0.30.0 → 0.30.1

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• Merge pull request #311 from pachterlab/development

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• update linux kallisto binaries

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• another style fix

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• more styling

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• Fix

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• fix some tests

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• update coverage

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• fix some lint

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• Update Python version in CI workflow

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• Update test_count.py to fix some tests

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• Merge pull request #213 from JohnMMa/remove-np.matrix-dependency

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• Merge pull request #307 from pachterlab/dependabot/pip/wheel-0.46.2

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• Merge pull request #308 from svdrecbd/optimize-scaling-and-parity

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Commits on Jan 30, 2026

• Optimize validation, matrix operations, reference generation, and process handling

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Commits on Jan 22, 2026

• Bump wheel from 0.38.1 to 0.46.2

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Commits on Oct 27, 2025

• Bump version: 0.29.5 → 0.30.0

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• Merge pull request #302 from BenjaminDEMAILLE/master

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• Delete IMPLEMENTATION_SUMMARY.md

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Commits on Oct 23, 2025

• Add --cellranger, --gzip, --delete-bus, and --genomebam/--cram support

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Commits on May 27, 2025

• Bump version: 0.29.4 → 0.29.5

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Commits on May 11, 2025

• Bump version: 0.29.3 → 0.29.4

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Commits on Apr 25, 2025

• Bump version: 0.29.2 → 0.29.3

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• Merge pull request #291 from pachterlab/devel

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• temporary adjustment to 10xv4

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• attempt to improve coverage

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• fix test

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• style

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• lint

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• fix

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• --exact-barcodes and -g None

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• add 10xv4

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• Update bustools binaries to bustools v0.45.0

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• Update .A to .toarray() for python3.10+

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