BIOINFORMATICS BINARIES

This repository contains all binaries relevant to bioinfo work. Most originate from neptune:/users/tg/lpryszcz/bin

Name		Name	Last commit message	Last commit date
Latest commit History 359 Commits
python_modules		python_modules
teaching		teaching
#fastq2kmers.py#		#fastq2kmers.py#
.gitignore		.gitignore
BRH.py		BRH.py
FastaIndex.py		FastaIndex.py
LICENCE.txt		LICENCE.txt
LICENSE		LICENSE
README		README
README.md		README.md
SOLiD2Std.pl		SOLiD2Std.pl
SraTailor		SraTailor
TE_analysis.py		TE_analysis.py
a.out		a.out
abi2fastq.py		abi2fastq.py
annotated_chromosomes.py		annotated_chromosomes.py
augustus_gff2fasta.py		augustus_gff2fasta.py
bam2RNAediting.py		bam2RNAediting.py
bam2amplicons.py		bam2amplicons.py
bam2bigwig.py		bam2bigwig.py
bam2cnv.py		bam2cnv.py
bam2counts.py		bam2counts.py
bam2cov.py		bam2cov.py
bam2cov.py_bck		bam2cov.py_bck
bam2cov_multi_pool.py		bam2cov_multi_pool.py
bam2cov_pool.py		bam2cov_pool.py
bam2coverage.py		bam2coverage.py
bam2difference.py		bam2difference.py
bam2editing_penetrance.py		bam2editing_penetrance.py
bam2enhancers.py		bam2enhancers.py
bam2heterozygous.py		bam2heterozygous.py
bam2mitochondrial.py		bam2mitochondrial.py
bam2paternal.py		bam2paternal.py
bam2snps.py		bam2snps.py
bam2snps.ref.py		bam2snps.ref.py
bam2stranded.py		bam2stranded.py
bam2sv.py		bam2sv.py
bam2vcf.py		bam2vcf.py
bed2RNALfold.py		bed2RNALfold.py
bed2cnv.py		bed2cnv.py
bed2cnv_plot.py		bed2cnv_plot.py
bed2count_filter.py		bed2count_filter.py
bed2graph.py		bed2graph.py
bed2igv_batch.py		bed2igv_batch.py
bed2region.py		bed2region.py
bed2stats.py		bed2stats.py
bedGraphToBigWig		bedGraphToBigWig
bedcount2plot.py		bedcount2plot.py
blast2hits.py		blast2hits.py
blast2matrix.py		blast2matrix.py
blast2nohit.py		blast2nohit.py
blastout2identity.py		blastout2identity.py
blastout2profile.py		blastout2profile.py
blat		blat
blat2collapse.py		blat2collapse.py
boxplot.py		boxplot.py
brh.py		brh.py
bwa		bwa
combine_windows.py		combine_windows.py
contig2gc.py		contig2gc.py
coords2ordered.py		coords2ordered.py
counts2cnv.mean.py		counts2cnv.mean.py
counts2cnv.py		counts2cnv.py
coverage_graph.py		coverage_graph.py
coverage_track.py		coverage_track.py
csv2common.py		csv2common.py
csv2fasta.py		csv2fasta.py
csv2xls.py		csv2xls.py
cuffdiff2de.py		cuffdiff2de.py
decypher2bed.py		decypher2bed.py
deseq2annotate.py		deseq2annotate.py
deseq2de.py		deseq2de.py
dropboxcrg		dropboxcrg
duptree		duptree
embl2fasta.py		embl2fasta.py
embl2gb.py		embl2gb.py
embl2gff.pl		embl2gff.pl
embl2gtf.py		embl2gtf.py
embl2protein.py		embl2protein.py
exonerate		exonerate
exonerate2ptc.py		exonerate2ptc.py
exonerategff2gtf.py		exonerategff2gtf.py
fasta2GC.py		fasta2GC.py
fasta2GCplot.py		fasta2GCplot.py
fasta2agp.py		fasta2agp.py
fasta2clusters.py		fasta2clusters.py
fasta2concatenated.py		fasta2concatenated.py
fasta2contigs.py		fasta2contigs.py
fasta2diverged.py		fasta2diverged.py
fasta2gaps.py		fasta2gaps.py
fasta2gc.py		fasta2gc.py
fasta2homozygous.py		fasta2homozygous.py
fasta2loh.py		fasta2loh.py
fasta2softmasked.py		fasta2softmasked.py
fasta_stats.py		fasta_stats.py
fastq2fasta.py		fastq2fasta.py
fastq2fastq.py		fastq2fastq.py
fastq2kmers.py		fastq2kmers.py
fastq2random.py		fastq2random.py
fastq2repeats.py		fastq2repeats.py

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