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Achievement: Pull SharkAchievement: Pair ExtraordinaireAchievement: Starstruck

Achievements

Achievement: Pull SharkAchievement: Pair ExtraordinaireAchievement: Starstruck

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p-gueguen/README.md

Hi there 👋

I'm a Bioinformatician at FGCZ – ETH Zurich, specializing in single-cell and spatial transcriptomics.

🔬 What I do

I support researchers across Switzerland with cutting-edge genomics technologies, including:

  • Spatial platforms: 10x Xenium, VisiumHD, CosMx
  • Single-cell: 10x Chromium, BD Rhapsody
  • Analysis: Multi-omics integration, immune profiling, custom pipelines

🛠️ Featured projects

📍 Spatial_transcriptomics_tools — A curated list of spatial transcriptomics analysis tools organized by category (segmentation, deconvolution, spatial domains, etc.)

💬 Let's connect

I'm always happy to discuss single-cell, spatial biology, or AI/ML applications in genomics.

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  1. Spatial_transcriptomics_tools Spatial_transcriptomics_tools Public

    List of Spatial Transcriptomics related Tools organized per category

    Python 112 17

  2. single_cell_NSCLC single_cell_NSCLC Public

    Jupyter Notebook 3 3

  3. uzh/sushi uzh/sushi Public

    SUSHI: Supporting User for SHell script Integration

    Ruby 27 9

  4. uzh/ezRun uzh/ezRun Public

    An R meta-package for the analysis of Next Generation Sequencing data

    R 27 9

  5. carmonalab/CD8_human_TIL_atlas_construction carmonalab/CD8_human_TIL_atlas_construction Public

    Python 5

  6. carmonalab/human_CD8_TIL_CaseStudies carmonalab/human_CD8_TIL_CaseStudies Public

    Projection example using a human CD8 TIL reference map.

    R 3