The documentation of PyDESeq2 is generated using Sphinx and hosted on ReadTheDoc. If you want to build the documentation from source, start by cloning the repository, if you have not done it yet.
git clone https://github.com/owkin/PyDESeq2.git
cd PyDESeq2We recommend installing within a conda environment, using the environment.yaml provided with the sources.:
conda env create -f environment.yml
conda activate pydeseq2Now go to the doc folder, and install the extraneeded dependencies.
cd docs
pip install -r requirements.txtYou can now trigger the build using make command line.
make clean html