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Commits on Jul 6, 2022

• Add modulo operator to filtering expressions. Resolves samtools#1744

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Commits on Jun 27, 2022

• Custom genotypes (e.g. -n c:1/1) now correctly override ploidy. Resolves samtools#1726

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Commits on Jun 21, 2022

• Fix duplications of PG line in +scatter

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• Add a new option -f to run only desired tests

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Commits on Jun 13, 2022

• Fix a bug introduced in 1.14

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Commits on May 31, 2022

• Add support for querying multiple filters

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Commits on May 25, 2022

• Remove unnecessary -t/-T requirement and make the default behavior explicit when -n/-C given. Resolves samtools#1718

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Commits on May 24, 2022

• Remove unnecessary assert. Resolves samtools#1717

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Commits on May 12, 2022

• Resolve merge conflicts

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• New -H, --header-line option

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• Add new NMBZ annotation

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• Switch cirrus ubuntu image to ubuntu:latest

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Commits on May 11, 2022

• Exit gracefully rather than segfaulting. See samtools#1716

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Commits on May 2, 2022

• Support both phased (1|0) and unphsed (1/0) genotypes. Resolves samtools#1710

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Commits on Apr 26, 2022

• Fix parsing minimal PED files. Resolves samtools#1696

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• Merge branch 'develop' of github.com:samtools/bcftools into develop

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• Add pointer to extended consensus documentation

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Commits on Apr 11, 2022

• Prevent segfault, fix samtools#1700

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Commits on Apr 7, 2022

• Merge version number bump and NEWS file from master

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• Release 1.15.1

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• Fix a bug introduced by c511995

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Commits on Apr 6, 2022

• Strip column type prefix to avoid confusion. Resolves samtools#1695

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• New plugin +variant-distance

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Commits on Apr 5, 2022

• Add NEWS updates

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Commits on Apr 1, 2022

• Minor usage page update

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Commits on Mar 30, 2022

• Fix endless loop or incorrect AF estimates

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Commits on Mar 29, 2022

• Prevent further segfaults with the combination of --atomize and --check-ref

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• Fix the loss of phasing in half-missing genotypes in variant atomization

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Commits on Mar 28, 2022

• Sanitize VEP field names that do not form valid INFO tags.

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Commits on Mar 21, 2022

• Allow multiple custom functions in a single run

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Commits on Mar 16, 2022

• Switch to https for htslib git clone

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Commits on Mar 11, 2022

• New -H, --header-line option

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Commits on Mar 8, 2022

• Support for filling in FORMAT tags

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Commits on Mar 3, 2022

• Document supported consequence types. Resolves samtools#1671

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Commits on Mar 1, 2022

• Check for non-ACGTN REF allele when atomizing,

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