aa.out

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file://some/path/human_g1k_v37.fasta
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=3,length=2147483647>
##contig=<ID=4,length=2147483647>
##contig=<ID=5,length=2147483647>
##contig=<ID=20,length=2147483647>
##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral allele">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	105	.	TAAACCCTA	T,TAACCCTA	999	PASS	.
2	1	.	GGGCGTCTCATAGCTGGAGCAATGGCGAGCGCCTGGACAAGGGAGGGGAAGGGGTTCTTATTACTGACGCGGGTAGCCCCTACTGCTGTGTGGTTCCCCTATTTTTTTTTTTTTCTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCCACC	ACG	999	PASS	.
2	101	.	A	ATT	999	PASS	.
2	114	.	T	TTC,TT	999	PASS	.
2	115	.	C	T	999	PASS	AA=C
20	3	.	G	CT	999	PASS	.
20	5	.	TG	CT	999	PASS	.
20	5	.	TGGG	TAC,TG,TGGGG,AC	.	PASS	.
20	59	.	AG	.	999	PASS	.
20	81	.	A	C	999	PASS	AA=A
20	84	.	G	T	999	PASS	AA=T
20	95	.	T	A	999	PASS	AA=T
20	95	.	TCACCG	AAAAAA	999	PASS	.
20	273	.	C	CAA,CAAA	999	PASS	.
20	273	.	C	CAAAAAAAAAA	999	PASS	.
20	273	.	C	CAA	999	PASS	.
20	275	.	A	C,G	999	PASS	AA=A
3	10	.	GTGGAC	GTGGACACAC,GTGGACAC,GTGGACACACAC,GTGG,GTGGACACACACAC,ATGGACACACAC	999	PASS	.
3	17	.	CA	C	999	PASS	.
4	36	.	TC	C,TT,TTC	999	PASS	.
5	21	.	A	AAG	999	PASS	.