diff --git a/.dockerignore b/.dockerignore
deleted file mode 100644
index 6b8710a7..00000000
--- a/.dockerignore
+++ /dev/null
@@ -1 +0,0 @@
-.git
diff --git a/.dockerignore b/.dockerignore
new file mode 120000
index 00000000..3e4e48b0
--- /dev/null
+++ b/.dockerignore
@@ -0,0 +1 @@
+.gitignore
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index d5657129..27eb3258 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,13 +1,20 @@
-secrets
-__pycache__
-.coverage*
-store/*
-.envrc
-.env
-**/.vscode/*
-data
-.mypy_cache
-.pre-commit-home
-log*.txt
-.dmypy.json
+**/__pycache__
 **/.DS_Store
+**/.vscode
+**/*.pickle
+**/*.pt
+**/*.sqlite
+/.coverage
+/.env
+/.git
+/.mypy_cache
+/.pre-commit-home
+/data
+/papers/*.pdf
+/papers/*.txt
+!/papers/keenan-2018-tiny.txt
+!/papers/keenan-2018.pdf
+/store
+/ui/.next/
+/ui/node_modules
+/ui/public/traces/*.jsonl
diff --git a/Dockerfile b/Dockerfile
index 4876d993..62726d4f 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -41,7 +41,7 @@ ENV PATH="${VIRTUAL_ENV}/bin:${PATH}"
 
 RUN python -c "import nltk; nltk.download('punkt')"
 
-COPY ui/package.json ui/package-lock.json ui/
+COPY ui/package.json ui/package-lock.json ui/patches ui/
 RUN npm --prefix ui ci
 
 COPY . .
diff --git a/cache/.gitignore b/cache/.gitignore
deleted file mode 100644
index e72d724c..00000000
--- a/cache/.gitignore
+++ /dev/null
@@ -1,2 +0,0 @@
-*.pickle
-*.sqlite
diff --git a/ice/nn/weights/.gitignore b/ice/nn/weights/.gitignore
deleted file mode 100644
index 4b6ebe5f..00000000
--- a/ice/nn/weights/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-*.pt
diff --git a/ice/trace.py b/ice/trace.py
index 4cd5922a..8334829a 100644
--- a/ice/trace.py
+++ b/ice/trace.py
@@ -33,7 +33,7 @@ def make_id() -> str:
 
 
 trace_dir = Path(__file__).parent.parent / "ui" / "public" / "traces"
-trace_dir.mkdir(exist_ok=True)
+trace_dir.mkdir(parents=True, exist_ok=True)
 trace_file: IO[str] | None = None
 
 
diff --git a/papers/.gitignore b/papers/.gitignore
deleted file mode 100644
index bf892bb7..00000000
--- a/papers/.gitignore
+++ /dev/null
@@ -1,6 +0,0 @@
-*.pdf
-*.txt
-
-# For tests
-!keenan-2018-tiny.txt
-!keenan-2018.pdf
diff --git a/ui/.gitignore b/ui/.gitignore
deleted file mode 100644
index 737d8721..00000000
--- a/ui/.gitignore
+++ /dev/null
@@ -1,35 +0,0 @@
-# See https://help.github.com/articles/ignoring-files/ for more about ignoring files.
-
-# dependencies
-/node_modules
-/.pnp
-.pnp.js
-
-# testing
-/coverage
-
-# next.js
-/.next/
-/out/
-
-# production
-/build
-
-# misc
-.DS_Store
-*.pem
-
-# debug
-npm-debug.log*
-yarn-debug.log*
-yarn-error.log*
-.pnpm-debug.log*
-
-# local env files
-.env*.local
-
-# vercel
-.vercel
-
-# typescript
-*.tsbuildinfo
diff --git a/ui/public/traces/.gitignore b/ui/public/traces/.gitignore
deleted file mode 100644
index 2fb4e2d9..00000000
--- a/ui/public/traces/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-*.jsonl