Reusable and Reproducible Healthcare Simulations in Python and R

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49 repositories

hdruk_tests
Public
Materials supporting our HDR UK Futures training videos on testing.
R
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MIT License
•0•0•3•0•Updated Jan 20, 2026Jan 20, 2026
json2ciw
Public
Convert valid JSON schema's of DES models to working Ciw models
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jan 14, 2026Jan 14, 2026
des_rap_book
Public
Step-by-step guide for building Python and R simulation models as part of a reproducible analytical pipeline (RAP).
R
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MIT License
•0•5•8•0•Updated Jan 12, 2026Jan 12, 2026
stars
Public
Website for STARS: Sharing Tools and Artefacts for Reproducible and Reusable Simulations in healthcare
Lua
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MIT License
•0•0•2•0•Updated Jan 12, 2026Jan 12, 2026
intro-open-sim
Public
An introduction to building open Descrete-Event Simulation (DES) in Python
Jupyter Notebook
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MIT License
•5•8•0•1•Updated Jan 2, 2026Jan 2, 2026
pydesrap_mms
Public template
Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing an M/M/s queueing model.
python template simulation reproducible-research reproducible-science healthcare simulation-framework simulation-modeling simulation-model simpy
Jupyter Notebook
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MIT License
•0•5•3•0•Updated Dec 17, 2025Dec 17, 2025
stars-logo
Public
STARS branding
Creative Commons Attribution 4.0 International
•0•2•1•0•Updated Dec 3, 2025Dec 3, 2025
llm_simpy_models
Public
The SimPy models and apps generated by LLMs, deployed as a single app.
Python
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MIT License
•0•1•0•0•Updated Dec 2, 2025Dec 2, 2025
pydesrap_stroke
Public
Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing the Stroke Capacity Planning Model from Monks et al. 2016.
python simulation reproducible-research reproducible-science healthcare simulation-framework stroke simulation-modeling simulation-model simpy
Jupyter Notebook
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MIT License
•0•2•1•0•Updated Nov 27, 2025Nov 27, 2025
rdesrap_stroke
Public
Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing the Stroke Capacity Planning Model from Monks et al. 2016.
r simulation reproducible-research reproducible-science healthcare simulation-framework stroke simulation-modeling simulation-model reproducible-analytical-pipeline
R
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Other
•0•1•1•0•Updated Nov 27, 2025Nov 27, 2025
rdesrap_mms
Public template
Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing an M/M/s queueing model.
template r simulation reproducible-research reproducible-science healthcare simulation-framework simulation-modeling simulation-model reproducible-analytical-pipeline
R
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Other
•1•2•2•0•Updated Nov 27, 2025Nov 27, 2025
rdesrap_template
Public template
Template for structuring simulation research as an R package (as part of the DES RAP Book)
R
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Other
•0•0•0•0•Updated Oct 23, 2025Oct 23, 2025
pydesrap_template
Public template
Template for structuring simulation research as a Python package (as part of the DES RAP Book)
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Oct 23, 2025Oct 23, 2025
des_agent
Public
An AI agent that can discovery, run, experiment, and report results from any DES model setup as a MCP server.
Python
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MIT License
•0•1•6•0•Updated Oct 6, 2025Oct 6, 2025
stars-stlite-example
Public
STARS Project: deploying a python DES model using stlite
Python
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MIT License
•3•2•0•0•Updated Sep 18, 2025Sep 18, 2025
llm_simpy
Public
Research Compendium for exploring the ability of LLMs to generate SimPy models and streamlit interfaces.
Jupyter Notebook
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MIT License
•0•3•0•0•Updated Sep 10, 2025Sep 10, 2025
.github
Public
GitHub profile
MIT License
•0•0•0•0•Updated Sep 10, 2025Sep 10, 2025
stars_wp1_summary
Public
Summary of the eight computational reproducibility assessments conducted as part of STARS Work Package 1. These assessed discrete-event simulation papers with models in Python and R.
TeX
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Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Sep 10, 2025Sep 10, 2025
identify_bias
Public
Trying out tools for identifying bias
Python
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MIT License
•0•0•1•0•Updated Jun 10, 2025Jun 10, 2025
stars_wp4_presentation
Public
Presentation on WP4: implemented reproducible DES examples + online book guiding through their creation
SCSS
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Creative Commons Attribution 4.0 International
•0•0•2•0•Updated Jun 6, 2025Jun 6, 2025
scope_wsc_2025
Public
Data and analysis for a literature review of simulation for othopaedics services
HTML
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MIT License
•0•0•0•0•Updated Apr 22, 2025Apr 22, 2025
gw4_prize_presentation
Public
Amy Heather's presentation for the GW4 Open Research Prize 2024/25
HTML
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Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Mar 28, 2025Mar 28, 2025
stars-ciw-example
Public
A treatment simulation model implemented in CiW
open-science healthcare reproducibility discrete-event-simulation model-reuse ciw shiny-python
Python
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GNU General Public License v3.0
•3•1•0•0•Updated Jan 22, 2025Jan 22, 2025
stars-reproduce-anagnostou-2022
Public
Assessing the computational reproducibility of Anagnostou et al. 2022 as part of STARS.
python simulation reproducible-research icu open-science reproducibility nhs intensive-care simpy discrete-event-simulation
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-shoaib-2022
Public
Assessing the computational reproducibility of Shoaib and Ramamohan 2022 as part of STARS.
python simulation reproducible-research open-science india reproducibility discrete-event-simulation quarto salabim
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-wood-2021
Public
Assessing the computational reproducibility of Wood et al. 2021 as part of STARS.
r simulation reproducible-research open-science reproducibility nhs intensive-care triage discrete-event-simulation covid-19
TeX
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GNU General Public License v3.0
•0•1•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-johnson-2021
Public
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
r simulation reproducible-research open-science reproducibility discrete-event-simulation quarto copd
R
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-kim-2021
Public
Assessing the computational reproducibility of Kim et al. 2021 as part of STARS.
r simulation reproducible-research open-science screening reproducibility nhs discrete-event-simulation quarto aneurysm
R
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GNU Lesser General Public License v3.0
•0•2•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-lim-2020
Public
Assessing the computational reproducibility of Lim et al. 2020 as part of STARS.
python simulation reproducible-research numpy pandas open-science reproducibility discrete-event-simulation quarto covid-19
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
stars-reproduce-huang-2019
Public
Assessing the computational reproducibility of Huang et al. 2019 as part of STARS.
r simulation reproducible-research open-science reproducibility discrete-event-simulation quarto simmer
TeX
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GNU General Public License v3.0
•0•1•0•0•Updated Jan 9, 2025Jan 9, 2025