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@complextissue Complex Tissue lab

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    7 repositories

    • pyclustree

      Public
      A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
      single-cellscverseclustreepyclustree
      Python
      •
      GNU General Public License v3.0
      •0•2•0•1•Updated Nov 15, 2024Nov 15, 2024

    • PyDESeq2

      Public
      A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
      Python
      •
      MIT License
      •63•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • pytximport

      Public
      Feature-rich Python implementation of the tximport package for gene count estimation.
      pythonbioinformaticsrna-seqdeseq2rnatximportanndatascverse
      Python
      •
      GNU General Public License v3.0
      •1•6•0•0•Updated Oct 24, 2024Oct 24, 2024

    • snakemake-bulk-rna-seq-workflow

      Public
      Snakemake workflow for bulk RNA sequencing with pytximport.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • xpysom

      Public
      XPySom is a minimalistic implementation of batch Self Organizing Map algorithm
      Python
      •
      GNU General Public License v3.0
      •424•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • .github

      Public
      0•0•0•0•Updated Feb 2, 2023Feb 2, 2023