Chan Zuckerberg Initiative

Sources

111 repositories

cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
•
MIT License
•1•4•5•5•Updated Nov 19, 2024Nov 19, 2024
single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
•
MIT License
•24•38•63•6•Updated Nov 19, 2024Nov 19, 2024
edu-design-system
Public
Design system for Education Projects
react design-system style-dictionary
TypeScript
•
MIT License
•4•29•1•2•Updated Nov 19, 2024Nov 19, 2024
cellxgene-census
Public
CZ CELLxGENE Discover Census
Jupyter Notebook
•
MIT License
•22•86•119•13•Updated Nov 18, 2024Nov 18, 2024
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
•
MIT License
•10•19•271•8•Updated Nov 18, 2024Nov 18, 2024
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
•
MIT License
•2•1•6•6•Updated Nov 19, 2024Nov 19, 2024
fogg
Public
Manage Infrastructure as Code with less pain.
terraform infrastructure-as-code infrastructure
Go
•
MIT License
•20•295•37•2•Updated Nov 18, 2024Nov 18, 2024
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
•
MIT License
•14•64•259•15•Updated Nov 18, 2024Nov 18, 2024
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
•
MIT License
•2•12•60•3•Updated Nov 18, 2024Nov 18, 2024
platformics
Public
Codegen Python GraphQL Entity Framework
Python
•
MIT License
•0•3•14•15•Updated Nov 15, 2024Nov 15, 2024
sci-components
Public
2021 Science Design System Component Library
react css theme design-system
TypeScript
•
MIT License
•7•25•108•2•Updated Nov 14, 2024Nov 14, 2024
cryoet-data-portal-neuroglancer
Public
CryoET Data Portal Neuroglancer configuration helper
Python
•
MIT License
•2•1•1•4•Updated Nov 13, 2024Nov 13, 2024
happy
Public
Happy Path Deployment Tool
kubernetes infrastructure terraform
Go
•
MIT License
•2•18•13•19•Updated Nov 11, 2024Nov 11, 2024
argo-helm-charts
Public
Smarty
•0•0•0•3•Updated Nov 15, 2024Nov 15, 2024
github-actions
Public
A collection of re-usable GitHub Actions
HCL
•
MIT License
•3•5•1•3•Updated Nov 7, 2024Nov 7, 2024
galago
Public
Interpretation aids for genomic epidemiology
TypeScript
•
MIT License
•3•8•63•0•Updated Nov 7, 2024Nov 7, 2024
cztack
Public
The CZI infrastructure stack.
HCL
•
MIT License
•25•64•3•4•Updated Nov 6, 2024Nov 6, 2024
czgenepi
Public
Python
•
MIT License
•4•13•1•7•Updated Nov 5, 2024Nov 5, 2024
czid-web
Public
Infectious Disease Sequencing Platform
science research biology sequencing computational-biology next-generation-sequencing bioinformatics-pipeline global-health virology infectious-diseases
TypeScript
•
MIT License
•24•79•0•2•Updated Oct 31, 2024Oct 31, 2024
homebrew-tap
Public
Ruby
•2•2•2•0•Updated Oct 30, 2024Oct 30, 2024
argus-artifacts
Public
MIT License
•0•1•0•0•Updated Oct 30, 2024Oct 30, 2024
cellxgene
Public
An interactive explorer for single-cell transcriptomics data
dataviz scrna-seq transcriptomics visualization scientific
JavaScript
•
MIT License
•119•634•128•1•Updated Nov 18, 2024Nov 18, 2024
axe-storybook-testing
Public
Command line interface for testing Storybook stories for accessibility.
accessibility axe testing
TypeScript
•
MIT License
•7•52•0•0•Updated Oct 21, 2024Oct 21, 2024
czid-workflows
Public
Portable WDL workflows for CZ ID production pipelines
Python
•
MIT License
•7•39•3•8•Updated Oct 7, 2024Oct 7, 2024
open-science
Public
curated links and customized materials to support biomedical researchers in implementing open science approaches
training open-source computational-biology open-science reproducibility biomedical-research reproducible-computational-methods
JavaScript
•
Other
•2•8•33•0•Updated Oct 5, 2024Oct 5, 2024
camelot
Public
Go
•
MIT License
•0•1•0•0•Updated Oct 3, 2024Oct 3, 2024
oss-archetypes
Public
framework and guidelines for the many ways of doing OSS in science
Creative Commons Attribution Share Alike 4.0 International
•1•1•3•0•Updated Sep 26, 2024Sep 26, 2024
semantic-find
Public
Repo for "Fuzzy Semantic Search" project during CZI Hackathon 2024 -- Search your documents by meaning, not just exact text matches!
Python
•
MIT License
•0•0•0•1•Updated Sep 19, 2024Sep 19, 2024
alhazen
Public
AI agents + toolkits for scientific knowledge
scientific-knowledge-engineering landscape-analysis large-language-models
Jupyter Notebook
•
MIT License
•0•23•1•2•Updated Sep 17, 2024Sep 17, 2024
create-sds-app
Public template
Repo template for npx create-sds-app
TypeScript
•
MIT License
•0•2•0•3•Updated Sep 11, 2024Sep 11, 2024