Repositories list

• medaka_behaviour_pilot

  Public
  Repository describing the analysis of bold-shy behaviours in different medaka fish strains.

  Jupyter Notebook

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• flexlmm

  Public
  Flexible linear mixed model framework for Genome Wide Association Studies

  Nextflow

  •

  MIT License

  •0•5•0•0•Updated Oct 3, 2024Oct 3, 2024

• ukb_smoke_copd_lung_cancer_gxe

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• FEHAT

  Public
  Software to detect heart rate from medaka embryos

  Python

  •

  GNU General Public License v3.0

  •1•4•0•0•Updated Sep 19, 2024Sep 19, 2024

• stitchimpute

  Public
  Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.

  Jupyter Notebook

  •

  MIT License

  •0•5•0•0•Updated Aug 22, 2024Aug 22, 2024

• varexplore

  Public
  Explore genetic variants linked around a variant of interest for low-coverage sequencing data

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• CNest

  Public
  Copy Number Methods for Detection and Genome Wide Association Tests

  C++

  •5•0•0•0•Updated Nov 3, 2023Nov 3, 2023

• somites

  Public
  HTML

  •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• MIKK_genome_main_paper

  Public
  Code for the paper describing the MIKK panel and its genome

  HTML

  •

  MIT License

  •3•0•0•0•Updated Feb 9, 2022Feb 9, 2022

• MIKK_genome_companion_paper

  Public
  Repository containing the code used for the MIKK panel genome analysis

  R

  •

  MIT License

  •0•1•0•0•Updated Dec 14, 2021Dec 14, 2021

• MIKK_GeneNetwork

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2021Sep 20, 2021

• Birney-pacman

  Public
  Python

  •0•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• foveafit

  Public
  R package for OCT analysis

  R

  •0•0•0•0•Updated Jul 12, 2021Jul 12, 2021