Repositories list

• bvv-playground

  Public
  playing with BigVolumeViewer LUTs/gamma/render

  fijivolume-renderingfiji-plugin

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•2•0•0•Updated Nov 15, 2024Nov 15, 2024

• PTU_Reader

  Public
  ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

  converterstackimagej-plugins+ 6lifetimefiji-pluginutrecht-universityimagejpt3picoquant

  Java

  •

  GNU General Public License v3.0

  •1•6•1•0•Updated Nov 13, 2024Nov 13, 2024

• KymoResliceWide

  Public
  ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves

  javaimagej-pluginsstacks+ 3fiji-pluginutrecht-universitykymography

  Java

  •

  Other

  •1•4•1•0•Updated May 8, 2024May 8, 2024

• Correlescence

  Public
  spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)

  imagejfijimicroscopy+ 5stackscross-correlationfiji-pluginutrecht-universityimagej-plugin

  Java

  •

  GNU General Public License v3.0

  •0•5•0•0•Updated Mar 25, 2024Mar 25, 2024

• ComDet

  Public
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

  javaimagej-pluginsfiji-plugin+ 6utrecht-universitydetectionparticlesmicroscopydotsvesicles

  Java

  •

  GNU General Public License v3.0

  •4•13•0•0•Updated Mar 8, 2023Mar 8, 2023

• DoM_Utrecht

  Public
  Detection of Molecules plugin for ImageJ, Utrecht University

  javasingle-moleculeimagej-plugins+ 3fiji-pluginimagejutrecht-university

  Java

  •

  GNU General Public License v3.0

  •4•14•11•0•Updated Nov 16, 2022Nov 16, 2022

• TrackMate2MTrackJ

  Public
  converter of Trackmate XML files to MTrackJ MDF

  Java

  •

  Other

  •1•2•0•0•Updated Jul 29, 2022Jul 29, 2022

• radialitymap

  Public
  Splitting image to radial and non-radial components ImageJ macro

  imagej-macroutrecht-university

  ImageJ Macro

  •

  GNU General Public License v2.0

  •2•6•0•0•Updated Jul 11, 2022Jul 11, 2022

• REALM

  Public
  Adaptive Optics plugin for MicroManager

  Java

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated May 23, 2022May 23, 2022

• MIRAO_DeviceAdapter

  Public
  Device adapter for MIRAO52E for Micro-Manager

  C++

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated May 23, 2022May 23, 2022

• ZstackDepthColorCode

  Public
  Z-stack Depth Colorcode ImageJ FIJI plugin

  imagejfijimicroscopy+ 4fiji-pluginutrecht-universitycolorcodeimagej-plugin

  Java

  •

  GNU General Public License v3.0

  •7•22•0•0•Updated Feb 17, 2021Feb 17, 2021

• rods-detection-in-noisy-images

  Public
  Detection of straight line segments (rods) in noisy images

  trackingdetectionmatlab-script+ 3fluorescence-microscopy-imagingimagej-macroutrecht-university

  MATLAB

  •

  GNU General Public License v3.0

  •3•4•0•0•Updated Jan 22, 2021Jan 22, 2021

• ContourLines

  Public
  imagej plugin generating contour lines with equal spacing

  imageimagejfiji+ 1contour-lines

  Java

  •

  MIT License

  •0•3•0•0•Updated Jan 11, 2021Jan 11, 2021

• MTA

  Public
  Multiscale Trend Analysis

  MATLAB

  •

  GNU General Public License v2.0

  •0•1•0•0•Updated Apr 15, 2020Apr 15, 2020

• Axonal_transport_model

  Public
  Simple mathematical model of bidirectional active transport in axons (written in Mathematica)

  Mathematica

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Nov 20, 2016Nov 20, 2016

• rods_bending

  Public
  Mathematica package to calculate the shape of thin flexible elastic rod under load.

  GNU General Public License v2.0

  •1•0•0•0•Updated May 8, 2014May 8, 2014

• AIS

  Public
  axon initial segment characterization/alignment

  MATLAB

  •0•1•0•0•Updated Apr 14, 2014Apr 14, 2014