Quantitative Image Informatics for Cancer Research

All

53 repositories

TCIABrowser
Public
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
3d-slicer tcia-dac nci-qin 3d-slicer-extension
Python
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Other
•9•18•0•0•Updated Oct 9, 2024Oct 9, 2024
pydcmqi
Public
Easy access Python wrapper of the DCMQI library
Python
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MIT License
•0•3•0•1•Updated Oct 7, 2024Oct 7, 2024
DICOM4QI
Public
DICOM4QI is an open demonstration and connectathon with the purpose of promoting and improving the use of DICOM for exchanging the quantitative image analysis results
10•4•5•0•Updated Sep 23, 2024Sep 23, 2024
dcmqi
Public
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
dicom quantitative-imaging imaging-informatics converters cancer-imaging-research medical-image-computing 3d-slicer nci-itcr tcia-dac nci-qin
C++
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BSD 3-Clause "New" or "Revised" License
•62•238•72•8•Updated Sep 5, 2024Sep 5, 2024
QuantitativeReporting
Public
Segmentation-based measurements with DICOM import and export of the results.
quantitative-imaging medical-image-computing nciitcr nci-itcr nci-qin 3d-slicer-extension dicom
Python
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Other
•23•23•27•2•Updated Aug 30, 2024Aug 30, 2024
PETLiverUptakeMeasurement
Public
3D Slicer Extension for measurement of liver uptake in PET scans
3d-slicer nci-qin 3d-slicer-extension
C++
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Other
•1•0•0•0•Updated Jun 15, 2024Jun 15, 2024
Slicer-PETDICOMExtension
Public
3D Slicer extension containing tools for importing DICOM PET series
3d-slicer-extension 3d-slicer
C++
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Other
•11•17•4•0•Updated Jun 12, 2024Jun 12, 2024
T1Mapping
Public
T1 mapping estimates effective tissue parameter maps (T1) from multi-spectral FLASH MRI scans with different flip angles.
3d-slicer 3d-slicer-extension
C++
•2•1•0•1•Updated Jun 12, 2024Jun 12, 2024
PETTumorSegmentation
Public
3D Slicer Extension for PETTumorSegmentation
3d-slicer nci-qin 3d-slicer-extension
C++
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Other
•10•14•0•0•Updated Jun 11, 2024Jun 11, 2024
SlicerLayoutButtons
Public
Python
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Other
•2•0•1•0•Updated May 14, 2024May 14, 2024
PkModeling
Public
Slicer Extension providing pharmacokinetic modeling
C++
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Other
•19•2•4•0•Updated Apr 23, 2024Apr 23, 2024
DSC_Analysis
Public
Analysis of Dynamic Susceptibility Contrast (DSC) MRI
C++
•5•6•0•0•Updated Apr 23, 2024Apr 23, 2024
SlicerDevelopmentToolbox
Public
API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.
events development mixins decorators helpers widgets slicer nci-itcr 3d-slicer-extension
Python
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Other
•7•7•4•0•Updated Apr 23, 2024Apr 23, 2024
PET-IndiC
Public
UIowa QIN PET volume indices measurement tool for 3D Slicer
3d-slicer 3d-slicer-extension
Python
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Other
•1•0•0•0•Updated Apr 23, 2024Apr 23, 2024
dcmqi-guide
Public
Learning materials for https://github.com/qiicr/dcmqi
quantitative-imaging imaging-informatics converters medical-image-computing dicom
JavaScript
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Other
•2•3•2•0•Updated Feb 1, 2024Feb 1, 2024
ITK-dcmqi
Public
This is a customized version of ITK to support dcmqi CI. It was manually and ugly stripped down to reduce build time and make continuous integration feasible.
C++
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Apache License 2.0
•0•0•0•0•Updated Jan 10, 2023Jan 10, 2023
zlib-dcmqi
Public
This is a version of zlib that is customized for dcmqi CI (see dcmqi branch)
C
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Other
•17•0•0•0•Updated Jan 9, 2023Jan 9, 2023
dcmtk-dcmqi
Public
This is a version of DCMTK that is customized for dcmqi CI (see dcmqi branch)
C++
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Other
•3•0•0•0•Updated Jan 5, 2023Jan 5, 2023
qiicr.github.io
Public
Web site for QIICR at http://qiicr.org
JavaScript
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MIT License
•3•1•0•0•Updated Jul 22, 2022Jul 22, 2022
SlicerPETPhantomAnalysis
Public
3D Slicer Extension for Analysis of Uniform Cylinder Phantom PET scans
3d-slicer-extension
C++
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Other
•2•0•0•0•Updated May 26, 2022May 26, 2022
dicom3tools
Public
This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.
dicom medical-imaging validators
Smarty
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Other
•3•6•1•0•Updated Dec 7, 2021Dec 7, 2021
lidc2dicom
Public
Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.
Jupyter Notebook
•12•25•5•0•Updated Jun 17, 2021Jun 17, 2021
LongitudinalPETCT
Public
Longitudinal PET/CT Analysis Module for Slicer 4
3d-slicer 3d-slicer-extension
C++
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Other
•7•4•6•1•Updated Apr 7, 2021Apr 7, 2021
QIN-PROSTATE-Repeatability-Radiomics
Public
Jupyter Notebook
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MIT License
•11•15•1•0•Updated Dec 6, 2020Dec 6, 2020
SlicerGCPSetup
Public
0•1•2•0•Updated Nov 1, 2020Nov 1, 2020
atom-dicom-dump
Public
Atom editor package for examining the content of DICOM files
viewer dcmdump dsrdump atom dicom dcmtk
CoffeeScript
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MIT License
•1•5•3•0•Updated May 28, 2020May 28, 2020
dcm2tables
Public
sql dicom rdb nci-itcr nci-qin nci-gdc
Python
•3•3•4•0•Updated Jul 18, 2019Jul 18, 2019
dicom4miccai-handson
Public
Supporting materials for the MICCAI 2017 DICOM tutorial. See accompanying documentation at https://qiicr.gitbook.io/dicom4miccai-handson/
handson nci-itcr nci-qin tutorial dicom
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•2•5•0•0•Updated Jun 5, 2019Jun 5, 2019
dicom4miccai
Public
Web site for the DICOM4MICCAI tutorial at the MICCAI conference (2017 and 2018)
dicom nci-itcr
HTML
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MIT License
•2•1•0•0•Updated Nov 14, 2018Nov 14, 2018
CI4CC-Spring2016-ASW
Public
Web site for the Academic Technology Development in Cancer Research workshop at CI4CC Spring 2016 Symposium
HTML
•0•0•0•0•Updated Jul 12, 2018Jul 12, 2018