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@PROBIC Probabilistic Inference, Privacy and Computational Biology group @ UH

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    15 repositories

    • MIA-HPO

      Public
      Analysing the privacy leakage due to HPO under DP
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • mSWEEP

      Public
      mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
      c-plus-plusmetagenomicshigh-throughput-sequencingtaxonomic-profilingplate-sweep
      C++
      •
      MIT License
      •2•13•1•0•Updated Oct 16, 2024Oct 16, 2024

    • omics-time-annotation

      Public
      A supervised time annotation method for omics experiments using Gaussian processes
      Jupyter Notebook
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • mGEMS

      Public
      mGEMS Genomic epidemiology with mixed samples
      c-plus-plusmetagenomicshigh-throughput-sequencingplate-sweepgenomic-epidemiologytaxonomic-binning
      C++
      •
      MIT License
      •1•16•3•0•Updated Sep 4, 2024Sep 4, 2024

    • MMDPGP-clustering

      Public
      A clustering method for gene expression time series with multiple replicates which uses Dirichlet processes and Gaussian process
      Jupyter Notebook
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • hyperparameters-neural-architectures-in-dp-dl

      Public
      Repository for the mimic-III models of the hyperparameters and neural architectures in differentially private deep learning master thesis
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

    • d3p-paper-experiments

      Public
      Experiments for d3p paper
      Python
      •
      Other
      •0•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • GPrank

      Public
      GPrank - R package
      R
      •
      Other
      •1•0•0•0•Updated Jun 18, 2018Jun 18, 2018

    • tigreBrowserWriter

      Public
      R package for writing tigrebrowser databases
      R
      •0•0•0•0•Updated Jun 7, 2018Jun 7, 2018

    • BIB-S-aureus-example

      Public
      Example of using BIB to identify Staphylococcus aureus strains
      Shell
      •
      MIT License
      •1•0•0•0•Updated Oct 30, 2017Oct 30, 2017

    • tigreBrowser

      Public
      tigreBrowser: web-based browser for genomic time course modelling results
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Feb 10, 2017Feb 10, 2017

    • diffsplicing

      Public
      Analysis of differential RNA splicing from RNA-seq time series data
      R
      •
      MIT License
      •0•3•0•0•Updated Jan 11, 2017Jan 11, 2017

    • edward

      Public
      A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.
      Python
      •
      Other
      •759•1•0•0•Updated Dec 14, 2016Dec 14, 2016

    • l1-inconsistency

      Public
      Code for experiments in inconsistency of l1-regularised sparse precision matrix estimation
      OpenEdge ABL
      •
      MIT License
      •0•1•0•0•Updated Oct 6, 2016Oct 6, 2016

    • BIB

      Public
      Bayesian Identification of Bacteria
      Python
      •
      MIT License
      •1•6•1•0•Updated Oct 3, 2016Oct 3, 2016