Repositories list

• dada2_ITS_workflow

  Public
  R

  •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• dada2_16S_workflow

  Public
  Amplicon sequencing workflow with snakemake and dada2

  snakemakedada216s-rrna+ 116srrna

  R

  •

  MIT License

  •1•2•0•0•Updated Aug 28, 2024Aug 28, 2024

• metatranscriptomics

  Public
  Our GitHub Metatranscriptomics Repository offers tools for analyzing RNA transcripts in microbial communities, revealing their active roles in different environments.

  Perl

  •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

• introR

  Public
  HTML

  •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

• CBW_IMPACTT_Workshop

  Public
  0•0•0•0•Updated Jun 30, 2023Jun 30, 2023

• shotgun_metagenomics_workshop

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

• microbiomeworkshop

  Public template
  16s microbiome analysis workshop

  HTML

  •

  MIT License

  •1•0•0•0•Updated Oct 3, 2022Oct 3, 2022

• IMCBioinformatics.github.io

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated Mar 2, 2022Mar 2, 2022

• DAAMS

  Public
  Differential abundance analysis for shotgun metagenomics

  HTML

  •0•0•1•0•Updated Feb 9, 2022Feb 9, 2022

• omnibus-and-maaslin2-rscripts-and-hmp2-data

  Public
  Omnibus and Maaslin2 Rscripts and hmp2-data

  R

  •5•0•0•0•Updated May 26, 2021May 26, 2021

• metagenomics_guidlines

  Public
  Helpful tips for designing metagenomics experiments

  MIT License

  •0•0•0•0•Updated Apr 7, 2021Apr 7, 2021

• Intermediate_Rworkshop2020

  Public
  Intermediate R workshop

  HTML

  •

  MIT License

  •0•0•0•0•Updated May 28, 2020May 28, 2020

• microbiomeworkshop2019

  Public
  HTML

  •0•0•0•0•Updated Apr 9, 2020Apr 9, 2020

• cytoMine

  Public
  CytoMine is a pipeline to analyze mass cytometry data

  R

  •0•0•0•0•Updated May 3, 2018May 3, 2018

• CyTOF

  Public
  Website

  HTML

  •0•1•0•0•Updated Jan 27, 2018Jan 27, 2018

• Rbootcamp2018

  Public
  Website for R workshop

  HTML

  •1•0•0•0•Updated Jan 10, 2018Jan 10, 2018

• Rbootcamp2017

  Public
  CSS

  •0•0•0•0•Updated Aug 29, 2017Aug 29, 2017

• CATALYST

  Public
  R

  •0•0•0•0•Updated Apr 26, 2017Apr 26, 2017

• cytofkit

  Public
  cytofkit: an integrated flow/mass cytometry data analysis pipeline

  R

  •27•0•0•0•Updated Apr 18, 2017Apr 18, 2017

• rbootcamp

  Public
  Materials for the R Bootcamp hosted by UCVM

  HTML

  •

  Creative Commons Attribution 4.0 International

  •4•0•0•0•Updated Jan 4, 2017Jan 4, 2017