Eden-Kramer Lab

All

40 repositories

ripple_detection
Public
Tools for identifying sharp wave ripple events using LFPs
Python
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MIT License
•10•33•0•0•Updated Oct 16, 2024Oct 16, 2024
replay_trajectory_classification
Public
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
replay hippocampus state-space-model clusterless sorted-spikes python
Jupyter Notebook
•
MIT License
•16•44•13•0•Updated Sep 21, 2024Sep 21, 2024
Switching_Oscillator_Networks
Public
MATLAB
•2•0•0•0•Updated May 9, 2024May 9, 2024
spectral_connectivity
Public
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
spectrogram electrophysiology coherence frequency-domain brain-connectivity multitaper connectivity-measures canonical-coherence phase-lag-index spectral-granger-causality
Python
•
GNU General Public License v3.0
•44•123•9•0•Updated Nov 2, 2023Nov 2, 2023
loren_frank_data_processing
Public
Python tools for reading in data from Loren Frank's lab
python data-preprocessing loren-frank-lab
Jupyter Notebook
•
GNU General Public License v3.0
•1•8•1•0•Updated Aug 16, 2023Aug 16, 2023
Common_Oscillator_Models
Public
Code repository of implementing the Common Oscillator Model
MATLAB
•2•2•0•0•Updated Jun 2, 2023Jun 2, 2023
UncertaintyInPhase
Public
Repository to run analyses described in paper: "Different methods to estimate the phase of neural rhythms agree, but only during times of low uncertainty "
MATLAB
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GNU General Public License v3.0
•2•3•0•0•Updated Jan 7, 2023Jan 7, 2023
regularized_glm
Public
Tools for fitting a generalized linear model with a L2 or difference penalty
Python
•
MIT License
•1•1•2•0•Updated Dec 13, 2022Dec 13, 2022
replay_identification
Public
A semi-latent state-space model that combines movement, LFP, and ensemble spiking information to identify periods of replay and decode its content in real time. Long Tao et al., unpublished.
neuroscience state-space replay hippocampus lfp
Python
•
MIT License
•3•5•5•0•Updated Oct 29, 2022Oct 29, 2022
Apnea_dynamics_toolbox
Public
The sleep apnea dynamics toolbox implemented in Matlab
MATLAB
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Other
•4•0•0•0•Updated Aug 22, 2022Aug 22, 2022
Seizure-Waves-Validation
Public
MATLAB
•2•0•0•0•Updated Aug 2, 2022Aug 2, 2022
replay_trajectory_paper
Public archive
TeX
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MIT License
•2•4•0•0•Updated Nov 3, 2021Nov 3, 2021
SSPE-paper
Public
Code repository to recreate the simulations and plots of the State Space model for Real Time Phase Estimation paper as well as code for the state space model in SSPE
MATLAB
•2•4•0•0•Updated Oct 27, 2021Oct 27, 2021
time_rescale
Public
Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem
python neuroscience spike neurons goodness-of-fit point-process time-rescaling
Jupyter Notebook
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MIT License
•4•3•3•0•Updated Oct 20, 2021Oct 20, 2021
CNN_Spectrogram_Algorithm
Public
A method to classify spectrograms from raw EEG data using a convolutional neural network
Jupyter Notebook
•4•0•0•0•Updated May 3, 2021May 3, 2021
spline-granger-causality
Public
A procedure to reduce the parameters estimate in Granger-causal analysis through temporal smoothing.
MATLAB
•6•5•0•0•Updated Apr 9, 2021Apr 9, 2021
dppm
Public
Matlab pipeline for simulating dynamical networks and evaluating dynamic community tracking methods, including CPM, MMM and DPPM
MATLAB
•6•14•0•0•Updated Nov 19, 2020Nov 19, 2020
video_behavior_tracking
Public
Python package to track position, velocity, head direction from video for Loren Frank datasets
python behavior kalman-filter
Python
•
MIT License
•2•2•1•0•Updated Oct 16, 2020Oct 16, 2020
spectral_rhythm_detector
Public
Python
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MIT License
•1•0•0•0•Updated Sep 18, 2020Sep 18, 2020
replay_classification
Public
State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016
neuroscience replay poisson hippocampus marked-point-process state-space-model sharp-wave-ripple multiunit neurons replay-content-classification
Python
•
GNU General Public License v3.0
•6•7•7•0•Updated Jul 20, 2020Jul 20, 2020
sumojam
Public
Python
•0•0•0•0•Updated Apr 18, 2020Apr 18, 2020
spindle_detector
Public
Detect spindles using an HMM
Python
•
MIT License
•2•1•0•0•Updated Feb 13, 2020Feb 13, 2020
GLM-CFC
Public
A GLM based approach to measure CFC
time-series neuroscience frequency-domain generalized-linear-models functional-connectivity cross-frequency-coupling
MATLAB
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GNU General Public License v3.0
•13•15•0•0•Updated Oct 4, 2019Oct 4, 2019
StateSpaceMarkedPointProcess
Public
MATLAB
•0•0•0•0•Updated Aug 6, 2019Aug 6, 2019
rate_adjustment_for_spike_coherence
Public
An implementation of the spike-rate adjustment method from Aoi et al. (2015) for comparing spike-field and spike-spike coherences.
python neuroscience spikes spike-field-coherence spike-spike-coherence firing-rate-dependence local-field-potential
Jupyter Notebook
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MIT License
•5•5•0•0•Updated May 12, 2019May 12, 2019
glm_course
Public
MATLAB
•2•0•0•0•Updated Mar 10, 2019Mar 10, 2019
Multi-Dimensional-Decoder
Public
Efficient Decoding of Multi-dimensional Signals from Population Spiking Activity Using a Gaussian Mixture Particle Filter
MATLAB
•2•5•0•0•Updated Jan 9, 2019Jan 9, 2019
GMM_PointProcess
Public
Closed Form Solution for 2D Replay Decoder Using Gaussian Mixture Models
MATLAB
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MIT License
•1•0•0•0•Updated Dec 11, 2018Dec 11, 2018
COMPASS
Public
COMPASS: an open-source, general-purpose software toolkit for computational psychiatry
learning matlab neuroscience state-space continuous discrete missing-data gamma censored-data
MATLAB
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MIT License
•3•2•0•1•Updated Nov 15, 2018Nov 15, 2018
Eden-Kramer-Lab
Public
Website
MIT License
•0•0•0•0•Updated Oct 12, 2018Oct 12, 2018