Skip to content
Change the repository type filter

All

    Repositories list

    • A phylogenetic profile analysis tool
      R
      Other
      932100Updated Oct 30, 2024Oct 30, 2024
    • cell_wall

      Public
      Jupyter Notebook
      2000Updated Oct 28, 2024Oct 28, 2024
    • fDOG

      Public
      Feature-aware Directed OrtholoG search
      Python
      GNU General Public License v3.0
      3940Updated Oct 28, 2024Oct 28, 2024
    • A minimalist cookiecutter for research and data science projects
      Python
      GNU General Public License v3.0
      35000Updated Sep 24, 2024Sep 24, 2024
    • XspecT2

      Public
      XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species level
      Python
      MIT License
      0000Updated Sep 9, 2024Sep 9, 2024
    • FAS

      Public
      FAS - Tool for Feature Architecture Similarity calculation
      Python
      GNU General Public License v3.0
      1530Updated Sep 5, 2024Sep 5, 2024
    • taXaminer

      Public
      Interactive exploration of biodiverse genome assemblies
      Python
      MIT License
      2200Updated Aug 7, 2024Aug 7, 2024
    • Jupyter Notebook
      2000Updated Mar 26, 2024Mar 26, 2024
    • Lite version of PhyloProfile for corona data
      R
      MIT License
      2000Updated Feb 19, 2024Feb 19, 2024
    • PhyloRBF

      Public
      R
      MIT License
      1000Updated Feb 19, 2024Feb 19, 2024
    • fCAT

      Public
      Python package for fCAT, a feature-aware completeness assessment tool
      Python
      GNU General Public License v3.0
      1230Updated Feb 15, 2024Feb 15, 2024
    • Jupyter Notebook
      GNU General Public License v3.0
      0000Updated Jan 16, 2024Jan 16, 2024
    • uGene

      Public
      Complementary software to PhyloProfile, designed for preprocessing extensive phylogenetic profiles.
      Python
      Other
      0000Updated Jan 10, 2024Jan 10, 2024
    • XspecT

      Public
      Python
      MIT License
      0000Updated Dec 14, 2023Dec 14, 2023
    • Web-based visualization and exploration of taXaminer datasets
      TypeScript
      MIT License
      1130Updated Dec 7, 2023Dec 7, 2023
    • Syntgeny

      Public
      Python
      GNU General Public License v3.0
      1000Updated Oct 25, 2023Oct 25, 2023
    • SPICE

      Public
      Tool that utilizes FAS on entire sets of transcripts to assess the impact of alternative splicing on proteome function.
      Python
      GNU General Public License v3.0
      0000Updated Oct 23, 2023Oct 23, 2023
    • ncortho

      Public
      Targeted ortholog search for miRNAs
      Python
      GNU General Public License v3.0
      2000Updated Jul 18, 2023Jul 18, 2023
    • MATT

      Public
      MATT
      JavaScript
      GNU General Public License v3.0
      1100Updated Jul 16, 2023Jul 16, 2023
    • Data for testing in-house tools with travis-ci
      GNU General Public License v3.0
      0000Updated May 24, 2023May 24, 2023
    • g_nom

      Public
      TypeScript
      2000Updated Mar 29, 2023Mar 29, 2023
    • BIOM

      Public
      BIOlogical data Management Tool
      Python
      1000Updated Nov 2, 2022Nov 2, 2022
    • CEPLA

      Public
      Pairwise comparisons of proteins based on their epitope landscape profiles
      OpenEdge ABL
      1000Updated May 19, 2022May 19, 2022
    • dcc2

      Public
      Dynamic core orthologs compilation tool
      Python
      GNU General Public License v3.0
      1000Updated Feb 10, 2022Feb 10, 2022
    • protTrace

      Public
      A simulation based framework to estimate the evolutionary traceability of protein.
      Python
      4510Updated Sep 30, 2021Sep 30, 2021
    • vicinator

      Public
      Python
      GNU General Public License v3.0
      0000Updated Sep 29, 2021Sep 29, 2021
    • The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package
      R
      MIT License
      0000Updated Jun 29, 2021Jun 29, 2021
    • HaMStR

      Public
      Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
      Perl
      GNU General Public License v3.0
      2960Updated Oct 6, 2020Oct 6, 2020
    • R Toolkit for generating and exploring phylogenetic profiles
      R
      GNU General Public License v3.0
      1000Updated Sep 25, 2020Sep 25, 2020
    • Conda recipes
      Shell
      GNU General Public License v3.0
      0000Updated Aug 17, 2020Aug 17, 2020