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    11 repositories

    • vectron

      Public
      Auto-vectroizer for dynamic programming algorithms
      C++
      •
      Apache License 2.0
      •0•2•1•0•Updated Nov 9, 2024Nov 9, 2024

    • aldy

      Public
      Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
      bioinformaticssequencingilluminagenotypeadmepgrnseqcyp2d6allele
      C
      •
      Other
      •20•57•3•0•Updated Nov 8, 2024Nov 8, 2024

    • secure-mice

      Public
      Secure multiple imputation with chain equations (Secure-MICE)
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • sequre

      Public
      A high-performance, Pythonic framework for secure computing in bioinformatics
      domain-specific-languagehomomorphic-encryptionmultiparty-computation
      C++
      •
      Apache License 2.0
      •1•18•13•0•Updated Sep 28, 2024Sep 28, 2024

    • geny

      Public
      Python
      •2•1•1•0•Updated Sep 9, 2024Sep 9, 2024

    • biser

      Public
      A fast tool for detecting and decomposing segmental duplications in genome assemblies
      bioinformaticsgenomicssegmental-duplications
      Jupyter Notebook
      •
      MIT License
      •0•43•6•0•Updated Feb 11, 2024Feb 11, 2024

    • sequre-mhe

      Public archive
      C++
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 10, 2024Jan 10, 2024

    • indelpost

      Public
      Python library for simple and complex indels.
      C
      •
      Apache License 2.0
      •3•0•0•0•Updated Sep 26, 2022Sep 26, 2022

    • haptreex

      Public
      Haplotype phaser for next-generation sequencing data
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•13•2•0•Updated Jan 13, 2022Jan 13, 2022

    • aldy-paper-resources

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Mar 7, 2018Mar 7, 2018

    • deez

      Public
      C++
      •0•0•0•0•Updated Dec 9, 2014Dec 9, 2014