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The configure_fastr script fixed
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‎com.oracle.truffle.r.native/run/configure_fastr

Lines changed: 159 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -36,14 +36,164 @@ while [ -h "$source" ] ; do
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fi
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done
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function printHelp {
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if [[ "$OSTYPE" == "darwin"* ]]; then
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echo "usage: configure_fastr [--help] [--configure-etc [--enable-native-compilers-toolchain]] [--gcc-lib-path <path>]"
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else
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echo "usage: configure_fastr [--help] [--configure-etc [--enable-native-compilers-toolchain]]"
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fi
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echo ""
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echo "optional arguments:"
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echo " --configure-etc Configure the files in the 'etc' folder. Unless '--enable-native-compilers-toolchain' is specified, the configuration will not affect the 'etc/Makeconf' file to preserve the original compilers toolchain configuration."
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echo " --enable-native-compilers-toolchain Include the 'etc/Makefile' file into the configuration. It will replace the original compiler toolchain configuration in 'etc/Makefile' with the native compilers toolchain."
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if [[ "$OSTYPE" == "darwin"* ]]; then
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echo " --gcc-lib-path <path> Use the <path> to locate the required gfortran libraries."
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fi
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echo ""
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echo "examples:"
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echo " * Basic FastR configuration:"
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echo ""
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echo " configure_fastr"
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echo ""
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echo " * An advanced FastR configuration with an additional configuration of the 'etc' folder except 'etc/Makefile':"
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echo ""
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echo " configure_fastr --configure-etc"
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echo ""
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if [[ "$OSTYPE" == "darwin"* ]]; then
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echo " * The most advanced FastR configuration with the complete configuration of the 'etc' folder. It also specifies the GCC path to locate the required libraries:"
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echo ""
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echo " configure_fastr --configure-etc --enable-native-compilers-toolchain --gcc-lib-path /usr/local/Cellar/gcc\@4.9/4.9.4_1/lib/gcc/4.9/"
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else
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echo " * The most advanced FastR configuration with the complete configuration of the 'etc' folder:"
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echo ""
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echo " configure_fastr --configure-etc --enable-native-compilers-toolchain"
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fi
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echo ""
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}
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GCC_LIB_PATH=""
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CONFIGURE_ARGS=""
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CONFIGURE_ETC=0
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while [[ $# -gt 0 ]]; do
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case $1 in
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--help)
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printHelp
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exit 0
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;;
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--gcc-lib-path)
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shift
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GCC_LIB_PATH=$1
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;;
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--configure-etc)
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CONFIGURE_ETC=1
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;;
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*)
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CONFIGURE_ARGS="$CONFIGURE_ARGS $1"
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;;
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esac
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shift
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done
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3999
(
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export GRAALVM_VERSION=`grep -o 'GRAALVM_VERSION=.*' "$( dirname "$source" )/../../../../release" | cut -d= -f2`
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cd -P "$( dirname "$source" )/../etc"
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./configure --with-x=no --with-aqua=no --enable-memory-profiling FFLAGS=-O2 $@
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ed Makeconf < edMakeconf.etc
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export R_DEFAULT_PACKAGES=base
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R_LIBS_USER=`../bin/R --slave -e 'cat(path.expand(Sys.getenv("R_LIBS_USER")))'`
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echo "Creating user specific library directory: $R_LIBS_USER"
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mkdir -p "$R_LIBS_USER"
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echo "DONE"
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if [[ "$OSTYPE" == "linux-gnu" ]]; then
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echo "int main(){}" | gcc -x c -Wl,--no-as-needed -lgfortran -lgcc_s -lquadmath -o /dev/null - > /dev/null 2>/dev/null
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res=$?
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if [[ $res != 0 ]]; then
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echo "Cannot build a simple C program linking with libgfortran, libgcc_s, and libquadmath."
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echo "Please install GCC using:"
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echo " On Debian based systems: apt-get install build-essential"
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echo " On CentOS/RHEL: yum groupinstall \"Developent Tools\""
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echo ""
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printHelp
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exit 1
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fi
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elif [[ "$OSTYPE" == "darwin"* ]]; then
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cd -P "$( dirname "$source" )/../lib"
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# correct paths on Mac OSX
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GFORTRAN_LIBRARIES="libgfortran.3.dylib libgfortran.5.dylib libquadmath.0.dylib libgomp.1.dylib libgcc_s.1.dylib"
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# This allows determining if all libraries were found after the main loop
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GFORTRAN_LIBRARIES_CHECK="libgfortran libquadmath libgomp libgcc_s"
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GFORTRAN_LOCATIONS="$GCC_LIB_PATH /opt/local/lib /opt/local/lib/libgcc /usr/local/gfortran/lib"
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TARGET_LIBRARIES="`find ../library/* | grep "\(\.dylib\|\.so\)$"` `find * | grep "\(\.dylib\|\.so\)$"`"
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FOUND=""
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LAST_FOUND=""
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for GFORTRAN_LIB in $GFORTRAN_LIBRARIES
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do
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# Remove the 'dylib' extension
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GFORTRAN_LIB_BASE=${GFORTRAN_LIB%.*}
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# Remove the number extension
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GFORTRAN_LIB_BASE=${GFORTRAN_LIB_BASE%.*}
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if [ "$LAST_FOUND" = "$GFORTRAN_LIB_BASE" ] ; then
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# A previous version of the current library has already been found
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echo "skipping $GFORTRAN_LIB"
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continue;
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fi
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for LOCATION in $GFORTRAN_LOCATIONS
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do
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if test -f "${LOCATION}/${GFORTRAN_LIB}"; then
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LIB_LOCATION="${LOCATION}/${GFORTRAN_LIB}"
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FOUND="$FOUND $GFORTRAN_LIB_BASE"
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LAST_FOUND=$GFORTRAN_LIB_BASE
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echo "${GFORTRAN_LIB} found at ${LIB_LOCATION}"
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for TARGET_LIB in $TARGET_LIBRARIES
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do
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# don't look at symlinks
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if [ ! -L "${TARGET_LIB}" ] ; then
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# grep for the current path of this gfortran library in this library's linking info
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CURRENT_LIB_NAME=`otool -L ${TARGET_LIB} | grep -o "\t.*${GFORTRAN_LIB_BASE}"`
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if [ ! -z "$CURRENT_LIB_NAME" ] ; then
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if [ "$CURRENT_LIB_NAME" != "$LIB_LOCATION" ] ; then
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# change to the new location
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echo "changing path to ${GFORTRAN_LIB} in ${TARGET_LIB} to $LIB_LOCATION"
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install_name_tool -change $CURRENT_LIB_NAME $LIB_LOCATION ${TARGET_LIB}
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fi
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fi
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fi
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done
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break
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fi
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done
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done
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if [ "$FOUND" != " $GFORTRAN_LIBRARIES_CHECK" ] ; then
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echo "From expected libraries '$GFORTRAN_LIBRARIES_CHECK' found only '$FOUND'."
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echo "Please ensure that you have gcc installed on your system, e.g., using homebrew or MacPorts (brew install gcc)."
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echo "If it is installed in a non-standard location, you can specify its location using the '--gcc-lib-path' parameter."
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echo ""
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printHelp
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exit 1
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fi
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else
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echo "Unknown operating system."
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echo "FastR may still work."
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echo "Make sure that GCC including gfortran and OpenMP is installed on your system."
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fi
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if [[ $CONFIGURE_ETC = 1 ]]; then
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export GRAALVM_VERSION=`grep -o 'GRAALVM_VERSION=.*' "../../../../release" | cut -d= -f2`
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cd ../etc
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echo "Running the configure script..."
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./configure --with-x=no --with-aqua=no --enable-memory-profiling FFLAGS=-O2 $CONFIGURE_ARGS > configure.log 2>&1
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res=$?
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if [[ $res != 0 ]]; then
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echo "The configuration step failed."
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echo "The log was saved into ${PWD}/configure.log"
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echo "FastR may still work, but compilation of some R packages may fail"
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exit 1
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fi
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ed Makeconf < edMakeconf.etc > /dev/null 2>/dev/null
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export R_DEFAULT_PACKAGES=base
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R_LIBS_USER=`"../bin/R" --slave -e 'cat(path.expand(Sys.getenv("R_LIBS_USER")))'`
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echo "Creating user specific library directory: $R_LIBS_USER"
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mkdir -p "$R_LIBS_USER"
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echo "DONE"
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fi
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49199
)

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