diff --git a/_viash.yaml b/_viash.yaml index 3a3b5ff..a90ae04 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -72,10 +72,11 @@ authors: orcid: "0009-0003-8555-1361" repositories: - - name: openproblems + - name: core type: github - repo: openproblems-bio/openproblems + repo: openproblems-bio/core tag: build/main + path: viash/core viash_version: 0.9.0 diff --git a/src/workflows/process_datasets/config.vsh.yaml b/src/workflows/process_datasets/config.vsh.yaml index 3d283dd..7d98b4b 100644 --- a/src/workflows/process_datasets/config.vsh.yaml +++ b/src/workflows/process_datasets/config.vsh.yaml @@ -23,8 +23,8 @@ resources: entrypoint: run_wf - path: /common/nextflow_helpers/helper.nf dependencies: - - name: common/check_dataset_schema - repository: openproblems + - name: schema/verify_data_structure + repository: core - name: data_processors/process_dataset runners: - type: nextflow diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml index 1d408ee..e162544 100644 --- a/src/workflows/run_benchmark/config.vsh.yaml +++ b/src/workflows/run_benchmark/config.vsh.yaml @@ -52,10 +52,8 @@ resources: - type: file path: /_viash.yaml dependencies: - - name: common/check_dataset_schema - repository: openproblems - - name: common/extract_metadata - repository: openproblems + - name: h5ad/extract_uns_metadata + repository: core - name: control_methods/no_denoising - name: control_methods/perfect_denoising - name: methods/alra