diff --git a/scripts/create_resources/test_resources.sh b/scripts/create_resources/test_resources.sh index 7713665..408b8f3 100755 --- a/scripts/create_resources/test_resources.sh +++ b/scripts/create_resources/test_resources.sh @@ -109,6 +109,6 @@ viash run src/data_processors/process_dataset/config.vsh.yaml -- \ # HERE # # only run this if you have access to the openproblems-data bucket -# aws s3 sync --profile op \ -# "$DATASET_DIR" s3://openproblems-data/resources_test/task_cyto_batch_integration \ -# --delete --dryrun +aws s3 sync --profile op \ + "$DATASET_DIR" s3://openproblems-data/resources_test/task_cyto_batch_integration \ + --delete --dryrun diff --git a/src/api/file_unintegrated.yaml b/src/api/file_unintegrated.yaml index b719085..f8e9b00 100644 --- a/src/api/file_unintegrated.yaml +++ b/src/api/file_unintegrated.yaml @@ -1,6 +1,6 @@ #TODO: Change to the required and/or optional fields of the anndata type: file -example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/train.h5ad" +example: "resources_test/task_cyto_batch_integration/starter_file/unintegrated.h5ad" label: "Unintegrated" summary: "Unintegrated dataset" diff --git a/src/api/file_unintegrated_censored.yaml b/src/api/file_unintegrated_censored.yaml index 2c53dd9..20d9f7b 100644 --- a/src/api/file_unintegrated_censored.yaml +++ b/src/api/file_unintegrated_censored.yaml @@ -1,6 +1,6 @@ #TODO: Change to the required and/or optional fields of the anndata type: file -example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/train.h5ad" +example: "resources_test/task_cyto_batch_integration/starter_file/unintegrated_censored.h5ad" label: "Unintegrated Censored" summary: "Unintegrated dataset" info: diff --git a/src/api/file_validation.yaml b/src/api/file_validation.yaml index ddbd980..ad29b2e 100644 --- a/src/api/file_validation.yaml +++ b/src/api/file_validation.yaml @@ -1,5 +1,5 @@ type: file -example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/solution.h5ad" +example: "resources_test/task_cyto_batch_integration/starter_file/validation.h5ad" label: Validation summary: Hold-out dataset for validation. description: |