.gitmodules

[submodule "binary"]
	path = binary
	url = https://github.com/opencobra/COBRA.binary.git
	ignore = dirty
	branch = master
[submodule "GeoCalcLib"]
	path = external/analysis/GeoCalcLib
	url = https://github.com/rmtfleming/GeoCalcLib.git
	ignore = dirty
	branch = master
[submodule "lusol"]
	path = external/base/solvers/lusol
	url = https://github.com/nwh/lusol.git
	ignore = dirty
	branch = master
[submodule "pdco"]
	path = external/base/solvers/pdco
	url = https://github.com/mxsaunders/pdco.git
	ignore = dirty
	branch = master
[submodule "Smith-Decomposition"]
	path = external/base/utilities/Smith-Decomposition
	url = https://github.com/nbfigueroa/Smith-Decomposition.git
	ignore = dirty
	branch = master
[submodule "gaimc"]
	path = external/analysis/gaimc
	url = https://github.com/dgleich/gaimc.git
	ignore = dirty
	branch = master
[submodule "models"]
	path = test/models
	url = https://github.com/opencobra/COBRA.models
	ignore = dirty
	branch = master
[submodule "Volume-and-Sampling"]
	path = external/analysis/Volume-and-Sampling
	url = https://github.com/Bounciness/Volume-and-Sampling.git
	ignore = dirty
	branch = master
[submodule "CnaCobraInterface"]
	path = external/analysis/CnaCobraInterface
	url = https://github.com/SteffKlamt/CnaCobraInterface.git
	ignore = dirty
	branch = master
[submodule "tutorials"]
	path = tutorials
	url = https://github.com/opencobra/COBRA.tutorials.git
	ignore = dirty
	branch = master
[submodule "papers"]
	path = papers
	url = https://github.com/opencobra/COBRA.papers.git
	ignore = dirty
        branch = master
[submodule "octave-networks-toolbox"]
	path = external/analysis/octave-networks-toolbox
	url = https://github.com/aeolianine/octave-networks-toolbox.git
	ignore = dirty
	branch = master
[submodule "looplessFluxSampler"]
	path = external/base/samplers/looplessFluxSampler
	url = https://github.com/rmtfleming/looplessFluxSampler
	ignore = dirty
	branch = master
[submodule "external/base/utilities/condalab"]
	path = external/base/utilities/condalab
	url = https://github.com/sg-s/condalab
        ignore = dirty
	branch = master
[submodule "external/analysis/PolytopeSamplerMatlab"]
	path = external/analysis/PolytopeSamplerMatlab
	url = https://github.com/ConstrainedSampler/PolytopeSamplerMatlab
        ignore = dirty
	branch = master
[submodule "external/base/io/xlread"]
	path = external/base/io/xlread
	url = https://github.com/tpfau/xlread
        ignore = dirty
        branch = master
[submodule "external/visualization/MatGPT"]
	path = external/visualization/MatGPT
	url = https://github.com/toshiakit/MatGPT.git
        ignore = dirty
        branch = main