-
Notifications
You must be signed in to change notification settings - Fork 36
Open
Description
Hi,
I installed pairtools through conda, when I try to run , it reported an error as follows, looks like the Numpy version is not correct. Any ideas to solve this?
Bests,
Wengang
(pairtools) [zhangwengang@Server1 hicmap]$ pairtools
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
Traceback (most recent call last): File "/home/zhangwengang/.conda/envs/pairtools/bin/pairtools", line 7, in <module>
from pairtools.cli import cli
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/cli/__init__.py", line 188, in <module>
from . import (
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/cli/dedup.py", line 14, in <module>
from ..lib import fileio, headerops, pairsam_format
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/lib/__init__.py", line 2, in <module>
from . import dedup
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/lib/dedup.py", line 9, in <module>
from . import dedup_cython, pairsam_format
Traceback (most recent call last):
File "/home/zhangwengang/.conda/envs/pairtools/bin/pairtools", line 7, in <module>
from pairtools.cli import cli
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/cli/__init__.py", line 188, in <module>
from . import (
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/cli/dedup.py", line 14, in <module>
from ..lib import fileio, headerops, pairsam_format
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/lib/__init__.py", line 2, in <module>
from . import dedup
File "/home/zhangwengang/.conda/envs/pairtools/lib/python3.12/site-packages/pairtools/lib/dedup.py", line 9, in <module>
from . import dedup_cython, pairsam_format
File "pairtools/lib/dedup_cython.pyx", line 1, in init pairtools.lib.dedup_cython
ImportError: numpy.core.multiarray failed to import (auto-generated because you didn't call 'numpy.import_array()' after cimporting numpy; use '<void>numpy._import_array' to disable if you are certain you don't need it).
Metadata
Metadata
Assignees
Labels
No labels