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@open-prophetdb

OpenProphetDB

OpenProphetDB is an open research group focused on unlocking the potential of existing drugs to save patients with rare and complex diseases.
README.md

Hi there 👋

Welcome to the OpenProphetDB! OpenProphetDB is an open research group focused on unlocking the potential of existing drugs to save patients with rare and complex diseases. We explore the following topics: constructing and integrating knowledge graph, multi-omics data, and deep learning models to understand the molecular mechanisms of human rare and complex diseases, or to predict new indications for known drugs through drug repurposing. Visit our official website for more information.

Network Medicine Platform for Drug Target & Drug Repurposing

>>> Online Explorer & Explainer

If you are interested in using knowledge graph and deep learning models to understand the molecular mechanisms of human rare and complex diseases, or to predict new indications for known drugs through drug repurposing. please visit our Online Explorer & Explainer to get started or the biomedgps repository to install the web platform locally.

>>> Building Your Own Knowledge Graph

If you are interested in building your own knowledge graph, please visit the biomedgps-data repository or the DocWebsite.

>>> Training Your Own GNN Models

If you are interested in training deep learning models based on the knowledge graph, please visit the biomedgps-model repository or the DocWebsite.

>>> Semi-Auto Labeling Tool for Biomedical Publications

If you want to construct a personalized knowledge graph by labeling any publications, please visit our Labeling Tool to get started or the prophet-studio repository to install the tool locally.

Insilico Clinical Trials Platform for Validating New Indications

Validating Drug Effects Using EHR and/or Patient Survey Data. Comming Soon...

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  1. biomedgps biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    Rust 15 2

  2. biomedgps-data biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    Jupyter Notebook 5 1

  3. prophet-studio prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    Python 5

  4. dgl-ke dgl-ke Public

    Forked from awslabs/dgl-ke

    High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

    Python

  5. biominer-components biominer-components Public

    UI Components for BioMiner

    TypeScript 1

  6. prophetdb.org prophetdb.org Public

    A website for OpenProphetDB community.

    1

Repositories

Showing 10 of 15 repositories
  • biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    open-prophetdb/biomedgps-data’s past year of commit activity
    Jupyter Notebook 5 1 8 0 Updated Nov 15, 2024
  • graph-builder Public

    A Graph Builder for BioMedGPS Project

    open-prophetdb/graph-builder’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 12, 2024
  • .github Public
    open-prophetdb/.github’s past year of commit activity
    0 0 0 0 Updated Oct 29, 2024
  • biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    open-prophetdb/biomedgps’s past year of commit activity
    Rust 15 AGPL-3.0 2 3 0 Updated Oct 25, 2024
  • prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    open-prophetdb/prophet-studio’s past year of commit activity
    Python 5 0 4 0 Updated Aug 22, 2024
  • prophetdb.org Public

    A website for OpenProphetDB community.

    open-prophetdb/prophetdb.org’s past year of commit activity
    0 MIT 1 0 0 Updated Aug 19, 2024
  • biominer-components Public

    UI Components for BioMiner

    open-prophetdb/biominer-components’s past year of commit activity
    TypeScript 1 0 0 0 Updated Aug 10, 2024
  • ontology-matcher Public

    It's a simple ontology matcher for building a set of cleaned ontologies. [For BioMedGPS project]

    open-prophetdb/ontology-matcher’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 26, 2024
  • postgresml Public Forked from postgresml/postgresml

    The GPU-powered AI application database. Get your app to market faster using the simplicity of SQL and the latest NLP, ML + LLM models.

    open-prophetdb/postgresml’s past year of commit activity
    Rust 0 MIT 305 0 0 Updated Jul 10, 2024
  • biomedical-knowledgebases Public

    A collection of biomedical knowledgebases, ontologies, and datasets.

    open-prophetdb/biomedical-knowledgebases’s past year of commit activity
    2 0 0 0 Updated Apr 16, 2024
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