From b3b6fc819318026c7241c543456cecd07f2ab4e7 Mon Sep 17 00:00:00 2001 From: Nikolay Dubina Date: Mon, 25 Mar 2024 17:37:07 +0800 Subject: [PATCH] batch-2 --- crunchbase.json | 42 +++ data.yml | 816 +++++++++++++++++++++++++++++++++-------- logos/brainsmash.svg | 1 + logos/dipy.svg | 1 + logos/emergent.svg | 1 + logos/erplab.svg | 1 + logos/fasttrack.svg | 1 + logos/itksnap.svg | 1 + logos/morphopy.svg | 1 + logos/neurolib.svg | 1 + logos/neutube.svg | 1 + logos/openneuro.svg | 1 + logos/opentrons.svg | 1 + logos/openuc2.svg | 1 + logos/pyphotometry.svg | 1 + logos/repronim.svg | 1 + logos/simba.svg | 1 + logos/sleap.svg | 1 + logos/stytra.svg | 184 ++++++++++ logos/uc2.svg | 1 + logos/uncertainpy.svg | 1 + logos/wholebrain.svg | 1 + 22 files changed, 901 insertions(+), 160 deletions(-) create mode 100644 logos/brainsmash.svg create mode 100644 logos/dipy.svg create mode 100644 logos/emergent.svg create mode 100644 logos/erplab.svg create mode 100644 logos/fasttrack.svg create mode 100644 logos/itksnap.svg create mode 100644 logos/morphopy.svg create mode 100644 logos/neurolib.svg create mode 100644 logos/neutube.svg create mode 100644 logos/openneuro.svg create mode 100644 logos/opentrons.svg create mode 100644 logos/openuc2.svg create mode 100644 logos/pyphotometry.svg create mode 100644 logos/repronim.svg create mode 100644 logos/simba.svg create mode 100644 logos/sleap.svg create mode 100644 logos/stytra.svg create mode 100644 logos/uc2.svg create mode 100644 logos/uncertainpy.svg create mode 100644 logos/wholebrain.svg diff --git a/crunchbase.json b/crunchbase.json index 812784d..cadfa45 100644 --- a/crunchbase.json +++ b/crunchbase.json @@ -393,5 +393,47 @@ "kind": "grant" } ] + }, + "https://www.crunchbase.com/organization/opentrons": { + "name": "Opentrons", + "generated_at": "2024-03-04T08:24:54.915013600Z", + "company_type": "for_profit", + "city": "New York", + "country": "USA", + "num_employees_max": 500, + "num_employees_min": 201, + "funding": 240000000, + "funding_rounds": [ + { + "amount": 200000000, + "announced_on": "2021-09-23", + "kind": "series_c" + }, + { + "amount": 20600000, + "announced_on": "2020-10-14", + "kind": "series_b" + }, + { + "amount": 2300000, + "announced_on": "2019-11-11", + "kind": "venture_round" + }, + { + "amount": 10000000, + "announced_on": "2018-03-27", + "kind": "seed" + }, + { + "amount": 7200000, + "announced_on": "2016-03-22", + "kind": "seed" + }, + { + "amount": 25000, + "announced_on": "2014-07-14", + "kind": "pre-seed" + } + ] } } diff --git a/data.yml b/data.yml index 947fda0..9f9c22f 100644 --- a/data.yml +++ b/data.yml @@ -254,13 +254,13 @@ landscape: academics: - academic: name: Oleg Nikitin - profile_url: https://scholar.google.ru/citations?user=XgiByAIAAAAJ&hl=en + profile_url: https://scholar.google.ru/citations?user=XgiByAIAAAAJ citations: 135 hindex: 4 i10index: 2 - academic: name: Olga Lukyanova - profile_url: https://scholar.google.ru/citations?user=9lg8OpcAAAAJ&hl=en + profile_url: https://scholar.google.ru/citations?user=9lg8OpcAAAAJ citations: 139 hindex: 4 i10index: 2 @@ -284,6 +284,45 @@ landscape: country: USA extra: summary_tags: cloud + - subcategory: + name: Lab Equipment & Robotics + items: + - item: + name: Opentrons + description: | + We make robots for scientists + At Opentrons we believe that scientists should be able to focus on their science to accelerate discovery and innovation, and that access to automation is a key tool to facilitate that. + Our mission is to democratize access to laboratory robotics. + There are currently ten times the number of scientists to lab robots in the world. When we're done, that ratio will be flipped, and there will be ten times the number of lab robots to scientists. + homepage_url: https://opentrons.com + logo: opentrons.svg + crunchbase: https://www.crunchbase.com/organization/opentrons + locations: + - location: + country: USA + extra: + summary_tags: automation, robotics + - item: + name: OpenUC2 + description: We provide composable lab equipment openUC2 optical toolboxes. + homepage_url: https://openuc2.com/team/#overview + logo: openuc2.svg + academics: + - academic: + name: Benedict Diederich + profile_url: https://scholar.google.de/citations?user=TvSHTGkAAAAJ + citations: 411 + hindex: 10 + i10index: 11 + - academic: + name: René Lachmann + profile_url: https://scholar.google.de/citations?user=kNlEu-sAAAAJ + citations: 170 + hindex: 5 + i10index: 4 + locations: + - location: + country: Germany - subcategory: name: Connectomics items: @@ -301,25 +340,25 @@ landscape: academics: - academic: name: Thomas Macrina - profile_url: https://scholar.google.com/citations?user=94I0duAAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=94I0duAAAAAJ citations: 979 hindex: 15 i10index: 19 - academic: name: Kisuk Lee - profile_url: https://scholar.google.com/citations?user=NUdCPGkAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=NUdCPGkAAAAJ citations: 2125 hindex: 22 i10index: 29 - academic: name: Sergiy Popovych - profile_url: https://scholar.google.com/citations?user=SW-oensAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=SW-oensAAAAJ citations: 903 hindex: 15 i10index: 16 - academic: name: Tri Minh Nguyen - profile_url: https://scholar.google.com/citations?user=AnU408sAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=AnU408sAAAAJ citations: 1003 hindex: 14 i10index: 15 @@ -367,7 +406,7 @@ landscape: academics: - academic: name: Reid Harrison - profile_url: https://scholar.google.com/citations?user=rCKlicEAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=rCKlicEAAAAJ citations: 8463 hindex: 37 i10index: 70 @@ -390,7 +429,7 @@ landscape: academics: - academic: name: Paul J. Tadrous - profile_url: https://scholar.google.com/citations?user=Fb7jTjoAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=Fb7jTjoAAAAJ citations: 2525 hindex: 21 i10index: 24 @@ -594,19 +633,19 @@ landscape: academics: - academic: name: André Maia Chagas - profile_url: https://scholar.google.com/citations?user=CGSly_wAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=CGSly_wAAAAJ hindex: 10 citations: 1002 i10index: 11 - academic: name: Matias Andina - profile_url: https://scholar.google.com/citations?user=PnTVdPAAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=PnTVdPAAAAAJ citations: 187 hindex: 2 i10index: 1 - academic: name: Cecilia Thomsett Herbert - profile_url: https://scholar.google.com/citations?user=wAjdb0cAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=wAjdb0cAAAAJ citations: 9 hindex: 2 i10index: 0 @@ -628,13 +667,13 @@ landscape: academics: - academic: name: Steffen Bollmann - profile_url: https://scholar.google.com/citations?user=HmXlj24AAAAJ&hl=de + profile_url: https://scholar.google.com/citations?user=HmXlj24AAAAJ citations: 1400 hindex: 17 i10index: 26 - academic: name: Angela Renton - profile_url: https://scholar.google.com/citations?user=6pC19kMAAAAJ&hl=en&oi=ao + profile_url: https://scholar.google.com/citations?user=6pC19kMAAAAJ&oi=ao citations: 89 hindex: 5 i10index: 3 @@ -652,37 +691,37 @@ landscape: academics: - academic: name: Adam L Tyson - profile_url: https://scholar.google.co.uk/citations?user=YhF8QhoAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=YhF8QhoAAAAJ citations: 489 hindex: 11 i10index: 11 - academic: name: Troy Margrie - profile_url: https://scholar.google.co.uk/citations?user=tdeQdPkAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=tdeQdPkAAAAJ citations: 7003 hindex: 35 i10index: 53 - academic: name: Tiago Branco - profile_url: https://scholar.google.com/citations?user=PJ7kIFMAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=PJ7kIFMAAAAJ citations: 5304 hindex: 33 i10index: 40 - academic: name: Ruben Portugues - profile_url: https://scholar.google.de/citations?user=gDcRyKsAAAAJ&hl=en + profile_url: https://scholar.google.de/citations?user=gDcRyKsAAAAJ citations: 5676 hindex: 29 i10index: 40 - academic: name: Federico Claudi - profile_url: https://scholar.google.co.uk/citations?user=8eDOmAQAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=8eDOmAQAAAAJ citations: 308 hindex: 7 i10index: 7 - academic: name: Luigi Petrucco - profile_url: https://scholar.google.it/citations?user=FQDeRWQAAAAJ&hl=it + profile_url: https://scholar.google.it/citations?user=FQDeRWQAAAAJ citations: 333 hindex: 8 i10index: 8 @@ -790,7 +829,7 @@ landscape: academics: - academic: name: Loic A. 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location: + country: USA + extra: + summary_tags: mri, pet, meg, eeg, bids, datalad, nih, brain-initiative, stanford, sqm.io, cophenagen, nsf - subcategory: name: Transcriptomics items: @@ -2623,13 +2714,13 @@ landscape: academics: - academic: name: Daniela Bourges-Waldegg - profile_url: https://scholar.google.com/citations?user=6-K_5jIAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=6-K_5jIAAAAJ citations: 381 hindex: 10 i10index: 10 - academic: name: Eric Perkins - profile_url: https://scholar.google.com/citations?user=uuOw_jQAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=uuOw_jQAAAAJ citations: 309 hindex: 4 i10index: 4 @@ -2872,7 +2963,7 @@ landscape: academics: - academic: name: Luke Hammond - profile_url: https://scholar.google.com/citations?user=Kyb0tMQAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=Kyb0tMQAAAAJ citations: 1156 hindex: 13 i10index: 13 @@ -2893,7 +2984,7 @@ landscape: academics: - academic: name: Raphael Vallat - 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Larson - profile_url: https://scholar.google.com/citations?user=bv0ezf0AAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=bv0ezf0AAAAJ citations: 3550 hindex: 34 i10index: 60 - academic: name: Denis A. Engemann - profile_url: https://scholar.google.de/citations?user=ombAzhMAAAAJ&hl=en + profile_url: https://scholar.google.de/citations?user=ombAzhMAAAAJ citations: 7211 hindex: 24 i10index: 37 - academic: name: Christian Brodbeck - profile_url: https://scholar.google.com/citations?user=m2x515IAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=m2x515IAAAAJ citations: 5341 hindex: 14 i10index: 19 @@ -3090,6 +3181,54 @@ landscape: country: USA extra: summary_tags: eeg meg, chan-zuckerberg-foundation, google, nih, nsf, erc, anr, amazon, us-department-of-energy, stars-2000 + - item: + name: ITK-SNAP + description: ITK-SNAP is a free, open-source, multi-platform software application used to segment structures in 3D and 4D biomedical images. + homepage_url: http://www.itksnap.org/ + repo_url: https://github.com/ABRG-Models/Stalefish + logo: stalefish.svg + academics: + - academic: + name: Paul Yushkevich + profile_url: https://scholar.google.com/citations?user=x-a4f8wAAAAJ + citations: 26657 + hindex: 56 + i10index: 159 + - academic: + name: Jilei Hao + profile_url: https://scholar.google.com/citations?user=6SIsC2UAAAAJ + citations: 1 + hindex: 1 + i10index: 0 + - academic: + name: Alison Pouch + profile_url: https://scholar.google.com/citations?user=FLKTVUYAAAAJ + citations: 1311 + hindex: 23 + i10index: 30 + locations: + - location: + country: USA + extra: + summary_tags: university-of-pennsylvania + - item: + name: WholeBrain + description: | + This tool provides a user-friendly and efficient way for scientist with minimal knowledge of computers to create anatomical maps + and integrate this information with behavioral and physiological data for sharing on the web. + homepage_url: https://github.com/tractatus/wholebrain/ + repo_url: https://github.com/tractatus/wholebrain/ + logo: wholebrain.svg + academics: + - academic: + name: Daniel Fürth + profile_url: https://scholar.google.com/citations?user=ZpYuXPIAAAAJ + citations: 1640 + hindex: 11 + i10index: 11 + locations: + - location: + country: Sweden - subcategory: name: Imaging and Microscopy items: @@ -3207,7 +3346,7 @@ landscape: academics: - academic: name: Kushal Kolar - profile_url: https://scholar.google.com.pe/citations?user=wU_Okg8AAAAJ&hl=fr + profile_url: https://scholar.google.com.pe/citations?user=wU_Okg8AAAAJ citations: 583 hindex: 3 i10index: 3 @@ -3233,7 +3372,7 @@ landscape: academics: - academic: name: Andrea Giovannucci - profile_url: https://scholar.google.com/citations?user=juWp02sAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=juWp02sAAAAJ citations: 3691 hindex: 22 i10index: 33 @@ -3252,7 +3391,7 @@ landscape: academics: - academic: name: Peter Rupprecht - profile_url: https://scholar.google.ch/citations?user=cNQCYjkAAAAJ&hl=de + profile_url: https://scholar.google.ch/citations?user=cNQCYjkAAAAJ citations: 492 hindex: 9 i10index: 9 @@ -3278,7 +3417,7 @@ landscape: academics: - academic: name: Venus Sherathiya - profile_url: https://scholar.google.com/citations?user=411usK4AAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=411usK4AAAAJ citations: 111 hindex: 4 i10index: 3 @@ -3306,43 +3445,43 @@ landscape: academics: - academic: name: Marius Pachitariu - profile_url: https://scholar.google.com/citations?user=fdHbkSgAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=fdHbkSgAAAAJ citations: 10270 hindex: 24 i10index: 28 - academic: name: Carsen Stringer - profile_url: https://scholar.google.co.uk/citations?user=6v9BmeYAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=6v9BmeYAAAAJ citations: 5120 hindex: 15 i10index: 17 - academic: name: Sven Schröder - profile_url: https://scholar.google.com/citations?user=3K6NzFcAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=3K6NzFcAAAAJ citations: 1888 hindex: 22 i10index: 47 - academic: name: Mario Dipoppa - profile_url: https://scholar.google.com/citations?user=QaFiSZUAAAAJ&hl=it + profile_url: https://scholar.google.com/citations?user=QaFiSZUAAAAJ citations: 1551 hindex: 13 i10index: 13 - academic: name: L. Federico Rossi - profile_url: https://scholar.google.com/citations?user=xxrep34AAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=xxrep34AAAAJ citations: 1156 hindex: 9 i10index: 9 - academic: name: Matteo Carandini - profile_url: https://scholar.google.com/citations?user=R3PGFHsAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=R3PGFHsAAAAJ citations: 30283 hindex: 80 i10index: 112 - academic: name: Kenneth Harris - profile_url: https://scholar.google.com/citations?user=jcYBNfIAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=jcYBNfIAAAAJ citations: 32208 hindex: 74 i10index: 120 @@ -3366,13 +3505,13 @@ landscape: academics: - academic: name: Yuhan Wang - profile_url: https://scholar.google.com/citations?user=tIWfvJcAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=tIWfvJcAAAAJ citations: 365 hindex: 8 i10index: 8 - academic: name: Konrad Rokicki - profile_url: https://scholar.google.com/citations?user=DLHPD1kAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=DLHPD1kAAAAJ citations: 1958 hindex: 9 i10index: 9 @@ -3393,7 +3532,7 @@ landscape: academics: - academic: name: Robert Haase - profile_url: https://scholar.google.de/citations?user=giB4g-MAAAAJ&hl=de + profile_url: https://scholar.google.de/citations?user=giB4g-MAAAAJ citations: 1719 hindex: 19 i10index: 26 @@ -3403,6 +3542,72 @@ landscape: country: Germany extra: summary_tags: fiji, icy + - item: + name: DIPY + description: | + DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. + Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging. + homepage_url: https://dipy.org/ + repo_url: https://github.com/dipy/dipy + logo: dipy.svg + academics: + - academic: + name: Eleftherios Garyfallidis + profile_url: https://scholar.google.com/citations?user=Ln2EyRYAAAAJ + citations: 5298 + hindex: 26 + i10index: 46 + - academic: + name: Matthew Brett + profile_url: https://scholar.google.com.vn/citations?user=q12RP7AAAAAJ + citations: 64079 + hindex: 42 + i10index: 59 + - academic: + name: Ariel Rokem + profile_url: https://scholar.google.com/citations?user=hrBeLVYAAAAJ + citations: 7583 + hindex: 40 + i10index: 64 + - academic: + name: Stéfan van der Walt + profile_url: https://scholar.google.com/citations?user=WWa5B6kAAAAJ + citations: 59736 + hindex: 20 + i10index: 25 + - academic: + name: Maxime Descoteaux + profile_url: https://scholar.google.com/citations?user=ohzG9ScAAAAJ + citations: 15724 + hindex: 60 + i10index: 177 + locations: + - location: + country: USA + extra: + summary_tags: ml, statistics, nih, chan-zuckerberg-foundation, uw + - item: + name: neuTube + description: | + DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. + Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging. + homepage_url: https://www.neutracing.com/ + repo_url: https://github.com/tingzhao/neutube + logo: neutube.svg + academics: + - academic: + name: Ting Zhao + profile_url: https://scholar.google.com/citations?user=lGzMhGIAAAAJ&hl=en + citations: 3969 + hindex: 22 + i10index: 32 + locations: + - location: + country: USA + - location: + country: South Korea + extra: + summary_tags: hhmi, kist - subcategory: name: Segmentation items: @@ -3455,7 +3660,7 @@ landscape: academics: - academic: name: Adam L Tyson - profile_url: https://scholar.google.co.uk/citations?user=YhF8QhoAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=YhF8QhoAAAAJ citations: 489 hindex: 11 i10index: 11 @@ -3604,13 +3809,13 @@ landscape: academics: - academic: name: James Knight - profile_url: https://scholar.google.co.uk/citations?user=asUiHlIAAAAJ&hl=en + profile_url: https://scholar.google.co.uk/citations?user=asUiHlIAAAAJ citations: 476 hindex: 11 i10index: 12 - academic: name: Thomas Nowotny - profile_url: https://scholar.google.ca/citations?user=W3T-i5AAAAAJ&hl=en + profile_url: https://scholar.google.ca/citations?user=W3T-i5AAAAAJ citations: 3175 hindex: 31 i10index: 60 @@ -3632,19 +3837,19 @@ landscape: academics: - academic: name: Romain Brette - profile_url: https://scholar.google.com/citations?user=lEHiPU4AAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=lEHiPU4AAAAJ citations: 8477 hindex: 39 i10index: 71 - academic: name: Dan Goodman - profile_url: https://scholar.google.com/citations?user=2HiNqI4AAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=2HiNqI4AAAAJ citations: 4476 hindex: 25 i10index: 35 - academic: name: Marcel Stimberg - profile_url: https://scholar.google.com/citations?user=KJs3XswAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=KJs3XswAAAAJ citations: 1564 hindex: 12 i10index: 13 @@ -3667,13 +3872,13 @@ landscape: academics: - academic: name: Marc-Oliver Gewaltig - profile_url: https://scholar.google.com/citations?user=Dy-lNyAAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=Dy-lNyAAAAAJ citations: 4989 hindex: 25 i10index: 40 - academic: name: Markus Diesmann - profile_url: https://scholar.google.ch/citations?user=q4bTHJoAAAAJ&hl=en + profile_url: https://scholar.google.ch/citations?user=q4bTHJoAAAAJ citations: 14387 hindex: 54 i10index: 116 @@ -3682,6 +3887,60 @@ landscape: country: Switzerland extra: summary_tags: epfl, blue-brain + - item: + name: neurolib + description: | + neurolib is a simulation and optimization framework for whole-brain modeling. + It allows you to implement your own neural mass models which can simulate fMRI BOLD activity. + neurolib helps you to analyse your simulations, to load and handle structural and functional brain data, + and to use powerful evolutionary algorithms to tune your model's parameters and fit it to empirical data. + homepage_url: https://github.com/neurolib-dev/neurolib + repo_url: https://github.com/neurolib-dev/neurolib + logo: neurolib.svg + academics: + - academic: + name: Caglar Cakan + profile_url: https://scholar.google.com/citations?user=WcS2RxwAAAAJ + citations: 201 + hindex: 6 + i10index: 5 + - academic: + name: Nikola Jajcay + profile_url: https://scholar.google.cz/citations?user=kynXndQAAAAJ + citations: 637 + hindex: 10 + i10index: 10 + locations: + - location: + city: Berlin + country: Germany + - location: + country: Czechia + extra: + summary_tags: bccn + - item: + name: emergent + description: | + emergent provides a toolkit / framework for implementing neural network models, written in Go, with an optional Python interface that is automatically generated from the Go code. See the github site for all the code and extensive documentation. + The primary application of emergent is for the biologically-based Leabra algorithm, which simulates point neuron equations with either rate-code or spiking activations, and a biologically-based form of error-backpropagation based on bidirectional excitatory projections. + This more complex, many-state-variable model is not well-supported by existing backpropagation-oriented tools such as PyTorch or TensorFlow, which operate fundamentally on simple tensors of floating-point numbers. + A primary goal of emergent is to provide effective GUI interfaces that make it easier to understand the functioning of complex neural models, including an interactive 3D NetView, interactive 2D line and bar plots, heat-map grids of tensors, and tables of data. + The eTorch repository provides these interactive GUI elements for PyTorch-based models. + homepage_url: http://emersim.org/ + repo_url: https://github.com/emer/emergent + logo: emergent.svg + academics: + - academic: + name: Randall C. O'Reilly + profile_url: https://scholar.google.com/citations?user=tZpKKm4AAAAJ + citations: 33694 + hindex: 70 + i10index: 124 + locations: + - location: + country: USA + extra: + summary_tags: bccn, ucdavis - subcategory: name: Deep Learning items: @@ -3741,7 +4000,7 @@ landscape: academics: - academic: name: Martin Reuter - profile_url: https://scholar.google.com/citations?user=CbdJk1wAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=CbdJk1wAAAAJ citations: 13085 hindex: 45 i10index: 70 @@ -3752,6 +4011,39 @@ landscape: country: Germany extra: summary_tags: pytorch, volumetric, reuter-lab, deep-mi-lab, mit, fmri, cnn + - item: + name: MorphoPy + description: | + MorphoPy is a Python3 package that uses networkX to compute and show information about neurites. + The input can be passed with single swc-files or it can handle whole directories with multiple files at once. + You can use MorphoPy imported in Python, as well as from the command line as a batch-tool. + homepage_url: https://jollejolles.github.io/pirecorder/ + repo_url: https://github.com/JolleJolles/pirecorder + logo: morphopy.svg + academics: + - academic: + name: Sophie Laturnus + profile_url: https://scholar.google.de/citations?user=MDz7wOIAAAAJ + citations: 793 + hindex: 7 + i10index: 5 + - academic: + name: Ziwei Huang + profile_url: https://scholar.google.com/citations?user=nCAr1egAAAAJ + citations: 79 + hindex: 4 + i10index: 2 + - academic: + name: Philipp Berens + profile_url: https://scholar.google.com/citations?user=lPQLk3QAAAAJ + citations: 13437 + hindex: 41 + i10index: 69 + locations: + - location: + country: Germany + extra: + summary_tags: features - subcategory: name: Electrophysiology items: @@ -3883,7 +4175,7 @@ landscape: academics: - academic: name: Luke Campagnola - profile_url: https://scholar.google.com/citations?user=CwVAgvcAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=CwVAgvcAAAAJ citations: 1247 hindex: 13 i10index: 14 @@ -3903,7 +4195,7 @@ landscape: academics: - academic: name: Marius Pachitariu - profile_url: https://scholar.google.com/citations?user=fdHbkSgAAAAJ&hl=en + profile_url: https://scholar.google.com/citations?user=fdHbkSgAAAAJ citations: 10270 hindex: 24 i10index: 28 @@ -3923,7 +4215,7 @@ landscape: academics: - 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item: + name: ERPLAB + description: | + ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. + It is tightly integrated with EEGLAB Toolbox, extending EEGLAB's capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. + A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users. + homepage_url: http://erpinfo.org/erplab + repo_url: https://github.com/ucdavis/erplab + logo: erplab.svg + academics: + - academic: + name: Steve Luck + profile_url: https://scholar.google.com/citations?user=vlTXmTgAAAAJ + citations: 69676 + hindex: 114 + i10index: 241 + - academic: + name: Emily Kappenman + profile_url: https://scholar.google.com/citations?user=ccbjkokAAAAJ + citations: 8097 + hindex: 34 + i10index: 47 + locations: + - location: + country: USA + extra: + summary_tags: erp, ucdavis, san-diego-state-university - subcategory: name: Cells & Transcriptomics items: @@ -4107,13 +4426,13 @@ landscape: academics: - 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location: + country: Norway + extra: + summary_tags: statistics + - item: + name: BrainSMASH + description: | + BrainSMASH (Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity) is a Python-based computational platform for statistical testing of spatially autocorrelated brain maps. + At the heart of BrainSMASH is the ability to simulate surrogate brain maps with spatial autocorrelation that is matched to spatial autocorrelation in a target brain map. + Additional utilities are provided for users using Connectome Workbench style surface-based neuroimaging files. + homepage_url: https://github.com/murraylab/brainsmash + repo_url: https://github.com/murraylab/brainsmash + logo: brainsmash.svg + academics: + - academic: + name: Joshua B. Burt + profile_url: https://scholar.google.com/citations?user=FeXjzecAAAAJ + citations: 1434 + hindex: 7 + i10index: 7 + - academic: + name: John D. Murray + profile_url: https://scholar.google.com/citations?user=LCAIVIUAAAAJ + citations: 8694 + hindex: 39 + i10index: 63 + locations: + - location: + country: USA + extra: + summary_tags: statistics, dartmouth + - item: + name: neurodocker + description: Generate custom Docker and Singularity images, and minimize existing containers + homepage_url: https://www.repronim.org/neurodocker/ + repo_url: https://github.com/ReproNim/neurodocker + logo: repronim.svg + academics: + - academic: + name: Jakub Kaczmarzyk + profile_url: https://scholar.google.com/citations?user=1QmdUeUAAAAJ + citations: 818 + hindex: 11 + i10index: 12 + - academic: + name: Remi Gau + profile_url: https://scholar.google.com/citations?user=gXOB3q8AAAAJ + citations: 1316 + hindex: 12 + i10index: 12 + locations: + - location: + city: New York + country: USA + extra: + summary_tags: neurodesk, containers, cloud - subcategory: name: Behavior items: @@ -4262,7 +4663,7 @@ landscape: academics: - academic: name: Jumpei Matsumoto - 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location: + country: France + extra: + summary_tags: tracking, behavioral, video + - item: + name: SLEAP + description: | + SLEAP is an open source deep-learning based framework for multi-animal pose tracking (Pereira et al., Nature Methods, 2022). + It can be used to track any type or number of animals and includes an advanced labeling/training GUI for active learning and proofreading. + homepage_url: https://sleap.ai + repo_url: https://github.com/talmolab/sleap + logo: sleap.svg + academics: + - academic: + name: Pereira, Talmo D + profile_url: https://scholar.google.com/citations?user=tFrElIUAAAAJ + citations: 1788 + hindex: 14 + i10index: 15 + - academic: + name: Matsliah, Arie + profile_url: https://scholar.google.com/citations?user=x9ywWiEAAAAJ + citations: 1473 + hindex: 21 + i10index: 26 + - academic: + name: David Turner + profile_url: https://scholar.google.com/citations?user=ceklpzkAAAAJ + citations: 845 + hindex: 11 + i10index: 11 + locations: + - location: + country: USA + - 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