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Commits on Jan 22, 2020

• Bump to v0.4

  

  Roderick Bovee

  committed
  78a268d

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• Drop failure & serde_derive and make lookups non-Optional

  

  Roderick Bovee

  committed
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Commits on Jan 19, 2020

• Guards on `change`, IntTaxID -> IntTaxId, and make Py iter zero copy

  

  Roderick Bovee

  committed
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• Require ranks for all nodes, add new ranks, and add `change` method to Py API

  

  Roderick Bovee

  committed
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Commits on Jan 14, 2020

• More tests, add JSON path & weights fxns to py API

  

  Roderick Bovee

  committed
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Commits on Jan 1, 2020

• Update distance code & add tests

  

  Roderick Bovee

  committed
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Commits on Dec 24, 2019

• Improve test coverage & add python tests

  

  Roderick Bovee

  committed
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Commits on Dec 17, 2019

• Update pyo3 & fix bindings

  

  Roderick Bovee

  committed
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Commits on Dec 16, 2019

• Add `drop` and `from_taxonomy` methods to GeneralTaxonomy

  

  Roderick Bovee

  committed
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Commits on Aug 20, 2019

• add a benchmark for tax prune

  

  Luiz Irber

  authored and

  bovee

  committed
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• Use Rust 1.37 on CI; closes #5

  

  Roderick Bovee

  committed
  5db1045

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• Fix pruning methods, bump dependencies, and cleanup

  

  Roderick Bovee

  committed
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Commits on Aug 19, 2019

• Fix bug when returning children of root that broke traversal. Closes #4

  

  Roderick Bovee

  committed
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Commits on Aug 15, 2019

• Fix taxonomy root and parent of root bugs

  

  Roderick Bovee

  committed
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Commits on Jun 6, 2019

• Tweaks and docs to get wheel build on manylinux working

  

  Roderick Bovee

  committed
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Commits on May 10, 2019

• Add notes to README about deploying wheels to PyPI

  boydgreenfield

  committed
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Commits on Apr 30, 2019

• Fix WIP python commit

  

  Roderick Bovee

  committed
  4a70e99

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• Port taxonomy-rs into this repo

  

  Roderick Bovee

  committed
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Commits on Mar 29, 2019

• Fixes Py2/3 compatibility with lca and file handling

  clausmith

  committed
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Commits on Aug 17, 2018

• Fix Py2/3 issue with taxonomy loading

  

  Roderick Bovee

  committed
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Commits on Feb 26, 2018

• Add support for loading taxonomies from results.json

  

  Roderick Bovee

  committed
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Commits on Dec 19, 2017

• Pin to networkx < 2.0. Version v0.2.1

  boydgreenfield

  committed
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Commits on Dec 2, 2016

• Speed up LCA by doing preorder traversal

  

  Roderick Bovee

  committed
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• Make lowest_common_ancestor_double public

  

  Roderick Bovee

  committed
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Commits on Dec 1, 2016

• Speed up lowest_common_ancestor by splitting lookup into doublets

  

  Roderick Bovee

  committed
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Commits on Oct 28, 2016

• Add another test to make sure lowest_common_ancestor works for build.jsons

  

  Roderick Bovee

  committed
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• Coerce tax ids from build.json to strings and add testing

  

  Roderick Bovee

  committed
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Commits on Oct 27, 2016

• Fix py.test testing

  

  Roderick Bovee

  committed
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• Rewrite taxonomy to support tree traversal operations

  

  Roderick Bovee

  committed
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Commits on Jan 26, 2016

• Update CircleCI badge for Github org rename

  boydgreenfield

  committed
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Commits on Jan 4, 2016

• Clean up up imports and fixed Py3 compat issue

  

  Roderick Bovee

  committed
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Commits on Apr 16, 2015

• Patched loading of the helpers module

  

  Samuel Minot

  authored and

  Samuel Minot

  committed
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Commits on Oct 7, 2014

• Fix typo in setup.py

  boydgreenfield

  committed
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Commits on Oct 1, 2014

• Fix taxonomy parsing to include root note. Add regression test.

  boydgreenfield

  committed
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Commits on Sep 29, 2014

• Merge branch 'master' of https://github.com/refgenomics/taxonomy

  nkrumm

  committed
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