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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 9 5

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 11 7

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 2 2

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 1 1

Repositories

Showing 10 of 249 repositories
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 2 MIT 2 0 2 Updated Aug 18, 2025
  • oicr-gsi Public

    Website for Genome Sequence Informatics

    oicr-gsi/oicr-gsi’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 18, 2025
  • xenoclassify-workflow Public

    workflow to classify short-read sequencing data generated from xenograft samples

    oicr-gsi/xenoclassify-workflow’s past year of commit activity
    WDL 0 0 0 1 Updated Aug 18, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 1 Updated Aug 18, 2025
  • variantEffectPredictor Public

    Variant Effect Predictor Workflow

    oicr-gsi/variantEffectPredictor’s past year of commit activity
    WDL 3 1 1 2 Updated Aug 18, 2025
  • tmbAnalysis Public

    A workflow to align fastq reads, call variants, annotate and assess TMB

    oicr-gsi/tmbAnalysis’s past year of commit activity
    WDL 0 0 0 1 Updated Aug 18, 2025
  • cellrangerDNACNV Public
    oicr-gsi/cellrangerDNACNV’s past year of commit activity
    WDL 0 0 0 0 Updated Aug 17, 2025
  • cellrangerAtacCount Public
    oicr-gsi/cellrangerAtacCount’s past year of commit activity
    WDL 0 0 0 0 Updated Aug 17, 2025
  • novoBreak Public

    WDL workflow for novoBreak (https://github.com/czc/nb_distribution)

    oicr-gsi/novoBreak’s past year of commit activity
    WDL 0 0 0 0 Updated Aug 17, 2025
  • nanoplot Public

    Workflow to run Nanoplot (Plotting tool for long read sequencing data and alignments)

    oicr-gsi/nanoplot’s past year of commit activity
    WDL 0 0 0 0 Updated Aug 17, 2025
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