From 6c6cdc6819441ac8bd75734683f87c99071c610e Mon Sep 17 00:00:00 2001
From: pichuan <pichuan@google.com>
Date: Tue, 27 Jul 2021 11:57:10 -0700
Subject: [PATCH] Update deeptrio training data.

PiperOrigin-RevId: 387162875
---
 docs/deeptrio-details-training-data.md | 21 +++++++++++++++------
 1 file changed, 15 insertions(+), 6 deletions(-)

diff --git a/docs/deeptrio-details-training-data.md b/docs/deeptrio-details-training-data.md
index bf4f7109..ce5667d3 100644
--- a/docs/deeptrio-details-training-data.md
+++ b/docs/deeptrio-details-training-data.md
@@ -1,13 +1,15 @@
 # DeepTrio training data
 
-### WGS models
+### WGS models<sup>[(1)](#vfootnote1)</sup>
 
 | version      | Replicates                         | #examples   |
 | ------------ | ---------------------------------- | ----------- |
 | Child model  |                                    |             |
-| 1.1.0        | 4 HG001/NA12891/NA12892 trios<br>7 HG005/HG006/HG007 trios <br>3 HG002/HG004/HG004 trios<sup>[(1)](#vfootnote1)</sup>| 566,589,652 |
+| 1.1.0        | 4 HG001/NA12891/NA12892 trios<br>7 HG005/HG006/HG007 trios <br>3 HG002/HG004/HG004 trios| 566,589,652 |
+| 1.2.0        | (Same model as 1.1.0)              |             |
 | Parent model |                                    |             |
-| 1.1.0        | 7 HG005/HG006/HG007 trios <br> 3 HG002/HG004/HG004 trios<sup>[(1)](#vfootnote1)</sup> | 315,847,934 |
+| 1.1.0        | 7 HG005/HG006/HG007 trios <br> 3 HG002/HG004/HG004 trios | 315,847,934 |
+| 1.2.0        | (Same model as 1.1.0)              |             |
 
 ### WES models
 
@@ -15,17 +17,21 @@
 | ------------ | ----------------------------------------------- | ---------- |
 | Child model  |                                                 |            |
 | 1.1.0        | 27 HG001/NA12891/NA12892 trios<br>6 HG005/HG006/HG007 trios <br>7 HG002/HG004/HG004 trios  | 18,002,596 |
+| 1.2.0        | (Same model as 1.1.0)              |             |
 | Parent model |                                                 |            |
 | 1.1.0        | 6 HG005/HG006/HG007 trios <br> 6 HG002/HG004/HG004 trios  | 4,131,018  |
+| 1.2.0        | (Same model as 1.1.0)              |             |
 
-### PACBIO models
+### PACBIO models<sup>[(2)](#vfootnote2)</sup><sup>[(3)](#vfootnote3)</sup>
 
 | version      | Replicates                         | #examples   |
 | ------------ | ---------------------------------- | ----------- |
 | Child model  |                                    |             |
-| 1.1.0        | 1 HG005/HG006/HG007 trio <br>8 HG002/HG004/HG004 trios<sup>[(2)](#vfootnote2)</sup> | 397,610,700 |
+| 1.1.0        | 1 HG005/HG006/HG007 trio <br>8 HG002/HG004/HG004 trios | 397,610,700 |
+| 1.2.0        | 1 HG005/HG006/HG007 trio <br>8 HG002/HG004/HG004 trios | 406,893,180<sup>[(4)](#vfootnote4)</sup> |
 | Parent model |                                    |             |
-| 1.1.0        | 1 HG005/HG006/HG007 trio <br> 8 HG002/HG004/HG004 trios<sup>[(3)](#vfootnote3)</sup> | 386,418,918 |
+| 1.1.0        | 1 HG005/HG006/HG007 trio <br> 8 HG002/HG004/HG004 trios | 386,418,918 |
+| 1.2.0        | 1 HG005/HG006/HG007 trio <br>8 HG002/HG004/HG004 trios | 392,749,204<sup>[(4)](#vfootnote4)</sup> |
 
 
 <a name="vfootnote1">(1)</a>: We include HG002/HG003/HG004 for training WGS
@@ -37,3 +43,6 @@ PacBio model training.
 
 <a name="vfootnote3">(3)</a>: PacBio training data contains training examples
 with haplotag sorted images and unsorted images.
+
+<a name="vfootnote4">(4)</a>: In v1.2.0, we updated the NIST truth versions we
+used for training.