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37 Open 177 Closed
37 Open 177 Closed
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Issues list

Request for Assistance with Replicating INDEL Imputation Accuracy Trends Using GLIMPSE2 from "Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes"(DOI: 10.1038/s41588-023-01438-3)
#249 opened Dec 23, 2024 by hardworking555
ASK: How can I filter controversal imputed result?
#248 opened Dec 18, 2024 by duaghk
Is long read input accepted by glimpse?
#247 opened Dec 10, 2024 by mesnger
Checking "burn-in" vs "burn" vs "burnin" arguments - consistent references?
#246 opened Dec 10, 2024 by bgulko
GLIMPSE2_phase using more CPU than expected
#245 opened Nov 25, 2024 by alshai
boost incompatibility with v2.0.1
#244 opened Nov 18, 2024 by baihesun
The use of "char" to hold signed values can lead to unexpected behaviour
#242 opened Nov 13, 2024 by rwk-unil
1
1
Ask about header of *rsquare.grp.txt.gz, output of GLIMPSE2 concordance
#235 opened Oct 30, 2024 by Truongphikt
1
--max-depth request
#232 opened Oct 3, 2024 by Ahhgust
Glimpse2 phasing returning sites from ref not in sample file
#228 opened Aug 13, 2024 by drneavin
Glimpse2_phase (2.0.0) segfault - but only with large number of variants in reference panel.
#227 opened Aug 12, 2024 by bgulko
accuracy of imputed genotypes
#226 opened Aug 9, 2024 by felassadi
GLIMPSE_phase (v1.1.1) segfault during finalization
#225 opened Aug 5, 2024 by TedBrookings
1
Floating point exception (core dumped) when run GLIMPSE2_phase
#220 opened Jul 16, 2024 by dangcaptkd2
2
How to imputate chrX using GLIMPSE2
#218 opened Jul 10, 2024 by raksasa
1
ESC[31mERROR: ESC[0mStates for individual 0 are zero. Error during selection.
#217 opened Jun 30, 2024 by NahlaHu
ERROR: Overlap between buffer-specific variants
#211 opened May 14, 2024 by drneavin
1
"High Proportion of SNPs with MAF of 0 in Imputed Low-Coverage Samples: Normal or Indicative of Issues?"
#209 opened Apr 16, 2024 by waitingwaitinghu
1
Information regarding GLIMPSE2_split_reference
#207 opened Apr 4, 2024 by dev3105
Buffer bug???
#206 opened Mar 29, 2024 by leedchou
2
Question Regarding the Use of GLIMPSE2 for Imputation
#205 opened Mar 21, 2024 by Taewoong-Ha
Priority of chunk parameters
#204 opened Mar 18, 2024 by leedchou
2
Issue in compiling GLIMPSE2
#203 opened Mar 15, 2024 by dev3105
1
Imputing Indels in low coverage WGS
#201 opened Mar 11, 2024 by sumudu-rangika
GLIMPSE2_ligate: Three files overlapping at position
#196 opened Jan 17, 2024 by Truongphikt
9
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