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fix(cli): read package-owned keys through the package bodies on a multi-package config
A multi-package composeStacks(..., { manifest: 'preserve' }) config carries
every package-owned collection inside the body of the package that owns it and
none at its top level. These readers looked at the top level only:
- os serve: requires (providers mounted), tiers, analyticsCubes (the always-on
analytics provider's cubes) and the declared-flow count of the automation line;
- os migrate plan/apply: the requires tokens that order a host plugin's hard
dependency on its provider;
- os generate: the missing-capability hint, and the objects that types, client
and migration generation emit;
- os doctor, os diff and os migrate meta's data-migration advice.
Each now reads by resolveStackCollection's rule (the top level when present,
otherwise every package body) or folds the stack with authoringRuleUnionStack.
A stack with no packages[] reads exactly as before.
Claude-Session: https://claude.ai/code/session_01RWZbGvPFcRKvUqASZtunCU
Co-Authored-By: Claude <noreply@anthropic.com>
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