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Image Analysis Training Resources

This project is intended to collect together various resources that can be useful when planning/delivering training in image analysis.

Detailed guidance for contributing can be found in CONTRIBUTING.md.

Repository

Current repository structure:

  • _includes/: among other things, contains folders holding activities and exercises specific to different platforms for image analysis, for each module
  • _layouts/, _sass/, Gemfile, _config.yml, .gitlab-ci.yml: material for building the webpages associated with this repository
  • figures/: a collection of illustrations/diagrams used to help explain the concepts in each module.
  • image_data/: image files used in activities and exercises
  • modules/: all of the individual module pages are collected here
  • src/: code for image analysis
  • workshops/: information on workshops taught using this material
  • example_images.md: intended to contain links to images that would make good examples when teaching
  • index.md: content for the website landing page

Website

Please visit the repository's website.

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Resources for teaching/preparing to teach bioimage analysis

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  • ImageJ Macro 33.5%
  • Python 28.2%
  • HTML 20.8%
  • SCSS 6.9%
  • R 4.8%
  • MATLAB 2.3%
  • Other 3.5%