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Installation
Nikolaos Pechlivanis edited this page Jul 7, 2020
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You can simply clone the repository by using git:
git clone https://github.com/nikopech/InterTADs
Before running any scripts, make sure the following packages are installed in your machine:
install.packages(c("data.table", "tidyverse", "gplots", "png", "gghalves"))
devtools::install_github("stephenturner/annotables")
...and from Bioconductor:
BiocManager::install(c("TxDb.Hsapiens.UCSC.hg19.knownGene", "TxDb.Hsapiens.UCSC.hg38.knownGene", "GenomicRanges", "org.Hs.eg.db", "systemPipeR", "karyoploteR"))